DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde6 and pde4ba

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_021332832.1 Gene:pde4ba / 565706 ZFINID:ZDB-GENE-030131-9570 Length:734 Species:Danio rerio


Alignment Length:599 Identity:146/599 - (24%)
Similarity:248/599 - (41%) Gaps:135/599 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 FEMSVQEYRRN------------------QILLNL--ARSIFEEQNNLECLVTK----------- 438
            :::|.:...||                  |:|.:|  .|:.|....|::|...|           
Zfish   142 YDLSPKSMSRNSSVASELHGDDLIVTPFAQVLASLRSVRNNFTVLTNVQCTSNKRSPVSNQPSIT 206

  Fly   439 ---IMTEARELLKCERCSVFLVDLDCCEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVL 500
               :..|:.:.|..|.    :.:||.| ...||.|      ...|::....|.:.|:|.||    
Zfish   207 RVCLPDESYQKLAVET----MEELDWC-LDQLETI------QTYRSVSDMASNKFKRMLNR---- 256

  Fly   501 FELGGEYQAANVSRPSVSELSSSTLAQIAQFVATTGQTVNICDVIEWVRDHNQIRAEDEIDSTQA 565
             ||           ..:||:|.|. .|:::|::.|           ::...|.:    ||.|   
Zfish   257 -EL-----------THLSEMSRSG-NQVSEFISNT-----------FLDKQNDV----EIPS--- 290

  Fly   566 ILCMPIMNAQKKVIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKV 630
                |...|::|. ...||:.:.:||      ..:....::.||:.....:              
Zfish   291 ----PTPKAREKK-KKQQLMTQISGV------KKVSHGPSLNCGIARFGVK-------------- 330

  Fly   631 ALECLSYHATASQDQTEKLTQDVIAEAESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQ 695
                     |..:|...|..:|:    ..:.|..||.:::......|| .:..:|.:.:|:..|:
Zfish   331 ---------TDKEDLLSKELEDL----NRWGLNIFTVSEYSNNRPLTC-IMYAIFQERDLLKTFK 381

  Fly   696 IPYDVLCRWVLSVRKNY-RPVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHD 759
            ||.|....:::::..:| :.|.|||..||.:|||:...:|.|..::...||||||..:.|...||
Zfish   382 IPTDTFVTYMMTLEDHYHQDVAYHNSLHAADVAQSTHILLSTPALDAVFTDLEILAAIFAAAIHD 446

  Fly   760 LDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVES 823
            :||.|.:|.|...|.|.||::|. .|.:|:||......:|..:..:|||.|:.:...|:.:.|..
Zfish   447 VDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLTKKQRTSLRRMVID 511

  Fly   824 AILSTDLAMYFKKRNAFLELVENGEFDWQG-------EEKKDLLCGMMMTACDVSAIAKPWEVQH 881
            .:|:||::.:.........:||..:....|       .::..:|..|:..| |:|...|..|:..
Zfish   512 MVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCA-DLSNPTKSLELYR 575

  Fly   882 KVAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCD-TFPWI 944
            :....:.:|||.|||.|:.: :...|  |.|:... .:.|.||||||.|..||:....| ..|..
Zfish   576 QWTDRIMEEFFHQGDRERERGMEISP--MCDKHTA-SVEKSQVGFIDYIVHPLWETWADLVHPDA 637

  Fly   945 TPLYEGTLENRRNW 958
            ..:.: |||:.|||
Zfish   638 QDILD-TLEDNRNW 650

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity