DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde10a

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_017214212.1 Gene:pde10a / 394077 ZFINID:ZDB-GENE-040426-1115 Length:852 Species:Danio rerio


Alignment Length:908 Identity:272/908 - (29%)
Similarity:429/908 - (47%) Gaps:146/908 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 HHHRQSNNNRPAVTNRSSETKLMTPTGSSSSPSQSPSQTQASIQTQTSQQDRLAKASTTASQQDV 143
            :.|:::.:.|||::.     |..||.........  :.|:.|:|                     
Zfish    40 NRHQRTRHYRPAMSK-----KRKTPDDGGGGGEL--ADTEDSLQ--------------------- 76

  Fly   144 DEVARLFEEKPEAFEKWLTERAPPEALS----RLQEFIENRKPHKRPSVTSDLFQQWMAASPTVQ 204
               ..|.:||.:|:            ||    .|.||:       ..||:|:...:|:       
Zfish    77 ---QGLTDEKVKAY------------LSLHPQMLDEFV-------LESVSSETVDRWL------- 112

  Fly   205 QKSPRSLSNSSASSLPECRRHLMDLDEGELFMELIRDVANELDI----DVLCHKILVNVGLLTHA 265
             |...|...:..||..|..|...|.:...:..||...:...||.    .:|.:::...:...|.|
Zfish   113 -KRKSSTQPADDSSAKEVSRQYQDTNMQSVVYELNSYMEQRLDTGGDNKLLLYELCNIIKTATKA 176

  Fly   266 DRGSLF--------LAKGTPTNKYLVAKLFDVTQKTALKDAVTRASAEEIIIPFGIGIAGMVAQT 322
            |..:|:        |...|||.           .|..|...:....     |.||..||..||:|
Zfish   177 DGFALYFLGECNNSLCLFTPTG-----------AKEGLPGLIPSGP-----ITFGTTIAAHVAKT 225

  Fly   323 KQMINIKEAYKDARFNCEIDLKTGYKTNAILCMPICNYEGDIIGVAQIINKTNGCMEFDEHDVEI 387
            ::.:.:::...|.||.......:|.:.:::||:||....||:|.:.: :::..|...|:....|:
Zfish   226 RKTLLVEDIMGDERFPHGTGQDSGIRVHSVLCLPILTAIGDLIAILE-LHRHLGREPFNLSHQEV 289

  Fly   388 FRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLECLVTKIMTEARELLKCERC 452
            ....|.:..:.|...|:.....::...|..||:::::.|:....::.|:..||..|:.|:..:||
Zfish   290 ATANLAWASVAIHQVQVCRGLAKQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRC 354

  Fly   453 SVFLVDLDCCEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANVSRPSV 517
            ::|.||       |..|.:                         ::.||::|.|.:...|.| ..
Zfish   355 ALFQVD-------HNNKEL-------------------------YSDLFDIGEENEGKPVFR-KT 386

  Fly   518 SELSSSTLAQIAQFVATTGQTVNICDVIEWVRDHNQIRAEDEID-----STQAILCMPIMNAQKK 577
            .|:..|....||..||.||:.:||.|.      :...|...|:|     :|:.||||||: ::..
Zfish   387 KEIRFSIEKGIAGQVARTGEVLNIPDA------YADPRFNREVDLYTGYTTRNILCMPIV-SRGT 444

  Fly   578 VIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLSYHATAS 642
            ||||.|::||..|..||.:|.:.|:.||:||.|.:|...||..........:|.:|.||||:..:
Zfish   445 VIGVVQMVNKLGGSAFTKTDENNFKMFAVFCALALHCANMYHRIRHSECIYRVTMEKLSYHSICT 509

  Fly   643 QDQTEKLTQDVIAEA--ESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQIPYDVLCRWV 705
            .::.:.|||..:..|  :...|:.|....||    :...|:. ::|..|...:.....:.|||:.
Zfish   510 SEEWKTLTQLTLPSAIYKEIELFHFDIAPFE----ELWPAIF-VYMVHNSCGKTSFELEKLCRFT 569

  Fly   706 LSVRKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQ 770
            :|||||||.|.||||:||:.||..|:|:|:  |.....|:||..|||:|||||||||||.:|::.
Zfish   570 MSVRKNYRRVPYHNWKHAVTVAHCMYAILQ--KTTGIFTELERKGLLIACLCHDLDHRGYSNSYL 632

  Fly   771 TKTESPLAILYTTSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFK 835
            .|.:.|||.||:|||||.|||.|.|.||..||:|||..|:..:|..|::.:..||::||||:||.
Zfish   633 QKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSNLTSGEYEQVLEIIRKAIIATDLALYFG 697

  Fly   836 KRNAFLELVENGEFDWQGEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKL 900
            .|....||:..|..|......:|.:.|:||||||:.::.|.|.|....|..:..||:.:|| |..
Zfish   698 NRKQLAELLSTGALDLNNRAHRDRVIGLMMTACDLCSVTKLWPVTRLTANDIYAEFWAEGD-EMK 761

  Fly   901 QLNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRNWQDLAE 963
            ::..||::||||::|||:|:.||||.:.:.:|.|..|.:.||...||.|...||...|:.:.:
Zfish   762 KIGMQPISMMDRDKKDEVPQGQVGFYNAVAIPCYTTLSELFPPSVPLLEACRENLSQWERIVQ 824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 37/170 (22%)
GAF 431..619 CDD:214500 58/192 (30%)
PDEase_I 717..950 CDD:278654 107/232 (46%)
pde10aXP_017214212.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56437
OrthoDB 1 1.010 - - D114875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5652
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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