DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and Pde8

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:NP_001163275.2 Gene:Pde8 / 37741 FlyBaseID:FBgn0266377 Length:1050 Species:Drosophila melanogaster


Alignment Length:1041 Identity:215/1041 - (20%)
Similarity:381/1041 - (36%) Gaps:259/1041 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PAGGAASPVEMSTTSSSSAATTSASSS----KPLTNGANKTAISTAAGGVTPGAVPGPGSGAIPA 67
            ||.|...|............|.||::|    :||...:...|||          :|..|..    
  Fly    95 PANGGIRPKSEGACPEMKVETISAATSPPPPRPLHGTSGPVAIS----------LPFVGRN---- 145

  Fly    68 SSSSGNQVKLEHHHRQSNNNRPAVTNRSSETKLMTPT--GSSSSPSQSPSQTQA--SIQTQTSQQ 128
            ||.:..:::||:.......:|..:|.....|:.::.:  |.....:..|...:|  |:.....:.
  Fly   146 SSKTPEEMELEYEANVEAESRDIMTPLRRNTRPLSVSFGGGGGRSALQPEIVEAIRSLDVPALRL 210

  Fly   129 DRLAKASTTASQQDVDEVARLFEEKP----EAFEKWLTERAPPEALSR-LQEFIENRKPH----- 183
            :.|:...:|..:.:.:..    ||:|    ...|..:..|.....|.| .....|.|.|.     
  Fly   211 NNLSFDGSTDPKGERNHA----EEEPLTPGHDHEDSVVLRRKVNCLERKAHSLYERRLPRVPKLH 271

  Fly   184 ------KRPSVTSDLFQQWM-----AASPTVQQKSP--RSL-----SNSSASSL-PECRRHLMDL 229
                  |.|....:.|:.:.     ...|||...:|  ::|     |:|...:: ..|:||.:| 
  Fly   272 LLVAGKKNPPTEEEEFRTFQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLD- 335

  Fly   230 DEGELFMELIRDVANELD------IDVLC-HKILVNVGLLTHADRGSLFLAKG-TPTNKYLVAKL 286
                  :.|::.....||      ....| |.|:::.....:.|  :..:|:. ..|:.:.:..:
  Fly   336 ------VTLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLD--AEHIARTIRHTHGHHLTTI 392

  Fly   287 FDVTQKTAL-KDAVTRASAEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDLKTGYKTN 350
            ..|.:|:.. ||.|       :|.....|:...||:|..:.           .|.::||.     
  Fly   393 IAVCKKSFFEKDDV-------LIALLDAGVNRCVAETTNLA-----------MCSVELKQ----- 434

  Fly   351 AILCMPICNYEGDIIGVAQIINKTNGCMEFDEHDVEIFRR-----YLTFCGIGIQNA-----QLF 405
                            :...|.:.:..|...:.......|     .:|...:.||.|     :|.
  Fly   435 ----------------ILHSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLL 483

  Fly   406 EMSVQEYRRNQ---ILLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDCCEASHL 467
            .|.:.|....|   |.::...:|.|:..|:: ....|:|..|:..:.....|.:|.:.|..::..
  Fly   484 NMRLDEIISKQLEDIFVSDLSTISEQCKNIK-EFDGILTVRRKSQEGIPMHVRVVPVACIGSAPT 547

  Fly   468 EKI---------------IEKPNQPATRAIKSAD--SFEEKKMRNRFTVLFELGGEYQAANVSRP 515
            ..|               :.:|.:....::.|..  ||:.:.:              .:..:.|.
  Fly   548 HLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFDVRSI--------------ASDGLRRT 598

  Fly   516 SVSELSSSTL-AQIAQFVATTGQTVNICD---------VIEWVR-------DHNQIRAEDEI--D 561
            |:::|:|..| |.|.:.:....|....|.         |:|:::       ...:||.:|.|  |
  Fly   599 SLAKLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKREGLYSPQMKEIRTDDPIATD 663

  Fly   562 STQAILCMPIMNAQKKVIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMA 626
            ...|:|..|.:.:.::                 .|:.||           |........|..:.|
  Fly   664 LIGALLTGPSVYSSRR-----------------SSNDSI-----------IRTGSSTRTAAIVPA 700

  Fly   627 KQKVALECLSYHATASQDQTEKLTQDVIAEAESYNLYSFTFTDFELVDDDTCRAVL----RMFMQ 687
            |.|                    :..:|.|....:| |:.|..|:|.:......:|    .||.:
  Fly   701 KMK--------------------SNPIIMELLDESL-SWDFDIFKLEEITDYHPLLYLGMEMFRR 744

  Fly   688 CNLVSQFQIPYDVLCRWVLSVRKNYRPVK-YHNWRHALNVAQTMFAMLK--TGKMERFMTDLEIL 749
            .::.:...|..:|...|:..:..:||... |||..||.:|.|...|.:.  |.|....|..:|..
  Fly   745 FDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDMLVMDRMEEA 809

  Fly   750 GLLVACLCHDLDHRGTNNAFQTKTESPLAILYTTST-MEHHH----FDQCVMILNSEGNNIFQAL 809
            ..|:|...||:||.|.::||...:...||:||...| :|:||    |.   :.|..:..|||:.|
  Fly   810 TALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENHHAAITFK---LTLGDDKINIFKNL 871

  Fly   810 SPEDYRSVMKTVESAILSTDLAMYFKKRNAFLELVENGEFDWQGEEKKD-----------LLCGM 863
            ..|.|:|...|:...||:|::..:|:....|:.:       :.|||.:|           |:..|
  Fly   872 DKETYKSARSTIIDMILATEMTRHFEHLAKFVSV-------FGGEEPRDHNPQTDEETSILMRRM 929

  Fly   864 MMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDV 928
            ::...|||..|:|.:...:.|:.:|:|:|.|.|.||.:.....:.|.|| ....:||.|:|||:.
  Fly   930 LIKVADVSNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDR-ATCSIPKSQIGFIEY 993

  Fly   929 I 929
            |
  Fly   994 I 994

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 28/177 (16%)
GAF 431..619 CDD:214500 35/223 (16%)
PDEase_I 717..950 CDD:278654 73/231 (32%)
Pde8NP_001163275.2 PAS 459..539 CDD:238075 17/80 (21%)
PAS_9 463..539 CDD:290162 17/76 (22%)
PDEase_I 775..1016 CDD:278654 73/231 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I1950
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46491
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.020

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