DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and dnc

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster


Alignment Length:1210 Identity:243/1210 - (20%)
Similarity:417/1210 - (34%) Gaps:359/1210 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DVSSPAGGAASPVEMSTTSSSSAATTSASSSKPLTN-----------GANKTAISTAAGGVTPGA 56
            |:...|||......::.|..:|  .|:..|.|.|.|           .|:..|.|.|:|.|...|
  Fly   163 DLYGGAGGGTKKHSLADTIDTS--VTTPISLKTLINDVDEELDQQLSAADIAAASLASGLVARRA 225

  Fly    57 VPGPGSGA-----------------------------IPASSSSGNQVKLEHHHRQSNNN-RPAV 91
            .|...|.|                             :|:|.:..:||.|......|.|. :.||
  Fly   226 EPETLSDASVSPTAVVQQQQQQQQQLQQPLLQSQPHFVPSSGNILSQVTLYSGSNPSTNPCQSAV 290

  Fly    92 TNRSSETKLMTPTGSSSSPSQSP------SQTQASIQTQTSQQDRLAKASTTASQQDVDEVARLF 150
            .|:..        .|:.:|:|:|      :|.:.|.|.|||....: |....:.|.:......|.
  Fly   291 QNQGQ--------NSNPNPNQNPNTNPNQNQQRCSCQPQTSPLPHI-KEEEESDQANFKHQTSLK 346

  Fly   151 EEKPEAFEKWLTERAPPEALS----------------------------RLQEFIEN-------- 179
            |.:|         ..||..::                            :.||:|..        
  Fly   347 EHQP---------LPPPITIATGYCGSCESVHHSSATSSSAGTVPPGGQQTQEYIAGTSSTPSPR 402

  Fly   180 -----RKPHKRPSVTSDLFQQW--------------MAASPTVQQKSPRSLSNSSASSLPECRRH 225
                 |||||         ..|              .:|:..:...|..:|::||.:.       
  Fly   403 IKLKFRKPHK---------SCWSRIVLAPIGSAGGSSSATTVIGSNSNETLASSSTTG------- 451

  Fly   226 LMDLDEGELFMELIRDVANELDIDVLCHKILVNVGLLTHADRGSLFLAKGTPTNKYLVAKLFDVT 290
                       .......|...:.|..|..|.:        ..:..||...|:|..|:       
  Fly   452 -----------GTATTTQNSSSVSVAAHHRLTS--------SSASALATSHPSNSQLL------- 490

  Fly   291 QKTALKDAVTRASAEEIIIPFGIGIAGMVAQ--TKQMINIKEAYKDARFNCEIDLKTGYKTNAIL 353
                   ..::..||:       |..|.:.:  ::.:.|.:....:.||    |::.|....:.|
  Fly   491 -------PTSKMQAEQ-------GSIGDLQKYHSRYLKNRRHTLANVRF----DVENGQGARSPL 537

  Fly   354 CMPICNYEGDIIGVAQIINKTNGCMEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQIL 418
                   ||.......::.             .:.:|..:|.   .::...||||.:...||.  
  Fly   538 -------EGGSPSAGLVLQ-------------NLPQRRESFL---YRSDSDFEMSPKSMSRNS-- 577

  Fly   419 LNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDCCEASHLEKIIEKPNQPATRAIK 483
             ::|...|:||.                      :..|||     .||.|.:|..|......:::
  Fly   578 -SIASERFKEQE----------------------ASILVD-----RSHGEDLIVTPFAQILASLR 614

  Fly   484 SADSFEEKKMRNRFTVLFELGGEYQAANVS-RPSVSELSS-------STLAQIAQFVATTGQTVN 540
            |        :||....|..:    .|:|.| ||:.|..:|       :.|:|..:  |.|....:
  Fly   615 S--------VRNNLLSLTNV----PASNKSRRPNQSSSASRSGNPPGAPLSQGEE--AYTRLATD 665

  Fly   541 ICDVIEWVRDHNQIRAEDEIDSTQAILCMPIMNAQKKVIGVAQLINKANGVPFTDSDASIFEAFA 605
            ..:.::|        ..|::::.|....:..|.:.|    ..:::||... .|::|..|..:...
  Fly   666 TIEELDW--------CLDQLETIQTHRSVSDMASLK----FKRMLNKELS-HFSESSRSGNQISE 717

  Fly   606 IFCGLGIHNTQMY-------ENACKLMAKQKVA-LECLSYHATASQDQTEKLTQ----------- 651
            ..|...:...|.:       |:..:|:|....| .:....:|.:...:...::|           
  Fly   718 YICSTFLDKQQEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHT 782

  Fly   652 ----------------------DVIAEAESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQF 694
                                  .::.|.:::.:..|:..:|.:....||.| ..:|....|::..
  Fly   783 NSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVA-YTIFQSRELLTSL 846

  Fly   695 QIPYDVLCRWVLSVRKNYRPVK---YHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACL 756
            .||......::.::..:|  ||   :||..||.:|.|:...:|.|..:|...|.||:.|.|.|..
  Fly   847 MIPPKTFLNFMSTLEDHY--VKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAAC 909

  Fly   757 CHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKT 820
            .||:||.|..|.|...:.|.||::|. .|.:|:||......:|.::|.:||..:..:..:::.|.
  Fly   910 IHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKM 974

  Fly   821 VESAILSTDLAMYFKKRNAFLELVENGEFDWQG-------EEKKDLLCGMMMTACDVSAIAKPWE 878
            |...:||||::.:.........:||..:....|       .::..:|..::..| |:|...||..
  Fly   975 VIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCA-DLSNPTKPLP 1038

  Fly   879 VQHKVAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCD-TF 941
            :..:...|:.:|||.|||.|:.. ::..|  |.||... .:.|.||||||.|..||:....| ..
  Fly  1039 LYKRWVALLMEEFFLQGDKERESGMDISP--MCDRHNA-TIEKSQVGFIDYIVHPLWETWADLVH 1100

  Fly   942 PWITPLYEGTLENRRNWQDLAEKVEMGLTWIDHDTIDKPVEEFAACADEEIKD--IEFTVTTLNC 1004
            |....:.:...|||..:|.:.                 |.....:..||..::  |.|.||....
  Fly  1101 PDAQDILDTLEENRDYYQSMI-----------------PPSPPPSGVDENPQEDRIRFQVTLEES 1148

  Fly  1005 NQQSQHGSEDSHTPEHQRSGSRLSMKKTGALGKAVRSKLS 1044
            :|::.     :...|...||...:  .||..|....|.||
  Fly  1149 DQENL-----AELEEGDESGGEST--TTGTTGTTAASALS 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 22/160 (14%)
GAF 431..619 CDD:214500 35/202 (17%)
PDEase_I 717..950 CDD:278654 73/242 (30%)
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 73/244 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I1950
eggNOG 1 0.900 - - E1_KOG3689
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46491
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.920

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