DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and Pde8b

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_008758892.1 Gene:Pde8b / 309962 RGDID:735041 Length:885 Species:Rattus norvegicus


Alignment Length:1010 Identity:207/1010 - (20%)
Similarity:374/1010 - (37%) Gaps:224/1010 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 STTSSSSAATTSASS--SKPL------TNGANKTAISTAAGGVTPGAVPGPGSGAIPASSSSGNQ 74
            |..|:|...|:|.|.  :.||      |:.|:....|.|||  .||||....|.|...|.||   
  Rat    20 SDESNSPRQTSSVSQGPTAPLHGLFVQTDAADAMPPSRAAG--PPGAVRVRRSRAELGSGSS--- 79

  Fly    75 VKLEHHHRQSNNNRPAVTNRSSETKLMTPTGSSSSPSQSPSQTQ-ASIQTQTSQQDRLAKASTTA 138
                     :.::.||.|......:      ...|.:::.:||. .|::..:|.:.|:.....| 
  Rat    80 ---------TGSSGPAATTCRGRRR------HCCSSAEAETQTSYTSVKQVSSAEVRIGPMRLT- 128

  Fly   139 SQQDVDEVARLFEEKPEAFEK--WLTERA--------PPEALSRLQEFIENRKPHK------RPS 187
              ||..:|..:|.::....:.  |..:||        .||  |.|:.|::  |.|:      |.:
  Rat   129 --QDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPE--SALECFLD--KHHEIIVIDHRQT 187

  Fly   188 VTSD---LFQQWMAASPT--------VQQKSPRSLSNSSASSLPECRRHLMDLDEGELFMELIRD 241
            ...|   :.:...|.:|:        |.|.|.   .:..||.||     |:.......|||....
  Rat   188 RNFDAEAVCRSIRATNPSEHTVILAVVSQASD---DHEEASVLP-----LLHAGFNRRFMENSSI 244

  Fly   242 VANELDIDVLCHKILVNVGLLTHADRGSLFLAKGTPTNKYLVAKLFDVTQKTAL---KDAVTRAS 303
            :|        |:..|:.:   .|.:..|.|..:...:       :|     |||   .:|:...|
  Rat   245 IA--------CYNELIQI---EHGEVRSQFKLRACNS-------VF-----TALDHCHEAIEITS 286

  Fly   304 AEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDLKTGYKTNAILCMPICNYEGDIIGVA 368
            .:.:|               |.:|  .|:         :...||....:|...:.:........|
  Rat   287 DDHVI---------------QYVN--PAF---------ERMMGYHKGELLGKELADLPKSDKNRA 325

  Fly   369 QIINKTNGCMEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLE 433
            .:::..|.|:          ::...:.|:.....:..: |:|::.:                   
  Rat   326 DLLDTINTCI----------KKGKEWQGVYYARRKSGD-SIQQHVK------------------- 360

  Fly   434 CLVTKIMTEARELLKCERCSVFLVDLDCCEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFT 498
              :|.::.:..::    |..|.|..| ||.....::|..........:.....||..|..|....
  Rat   361 --ITPVIGQGGKI----RHFVSLKKL-CCTTDSSKQIHRIHRDSGDNSQTEPHSFRHKSRRKESI 418

  Fly   499 VLFELGGEYQAA----NVSRPSVSELSSSTL-AQIAQFVATTGQTVNICDVIEWVRDHNQIRAED 558
            .:..:......|    |...||::.:.|.|: |.|.:          :.::|...::::.:...:
  Rat   419 DVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITK----------VINIINAAQENSPVTVAE 473

  Fly   559 EIDSTQAILCMPIMNAQKKVIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACK 623
            .:|....||            ...:|.:...|....|...|     .:..||      |.:...:
  Rat   474 ALDRVLEIL------------RTTELYSPQLGTKDEDPHTS-----DLVGGL------MTDGLRR 515

  Fly   624 LMAKQKVALECLSY-HATASQDQTEKLTQDVIAEAESYNLYSFTFTDFELVDDDTCRAV----LR 683
            |...:.|..:.:.: |:..|...|.......||:... |..|:.|..|||......|.:    |:
  Rat   516 LSGNEYVFTKNVHHSHSHLSMPITINDVPPSIAQLLD-NEESWDFNIFELEAITHKRPLVYLGLK 579

  Fly   684 MFMQCNLVSQFQIPYDVLCRWVLSVRKNYRPVK-YHNWRHALNVAQTMFAMLKTGKMERFMTDLE 747
            :|.:..:..........|..|:..:..||.... |||..||.:|.......|...:::..:..|:
  Rat   580 VFSRFGVCEFLNCTETTLRAWLQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLD 644

  Fly   748 ILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGN-NIFQALS 810
            .:..|:|...||:||.|..|:|.....|.||:||. |:.:|.||......:...:.. |||:.:.
  Rat   645 EVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNID 709

  Fly   811 PEDYRSVMKTVESAILSTDLAMYFKKRNAFLELV----------ENGEFDWQGE---EKKDLLCG 862
            ...||::.:.:...:|:|::..:|:..|.|:..:          .:.|.:..|:   |.:.|:..
  Rat   710 RNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKPLAAESEGSDCECNPTGKNFPENQILIKR 774

  Fly   863 MMMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKD-ELPKMQVGFI 926
            ||:...||:...:|.::..:.|..:::|:|.|.|.||.|  ..||.|...:|.. .:||.|:.||
  Rat   775 MMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQ--GLPVVMPVFDRNTCSIPKSQISFI 837

  Fly   927 DVICLPLYRVLCDTFPWITPLYEGTLENRRNWQDL 961
            |.....::.. .|.|..:..|.:...:|.::|:.|
  Rat   838 DYFITDMFDA-WDAFAHLPALMQHLADNYKHWKTL 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 22/161 (14%)
GAF 431..619 CDD:214500 31/192 (16%)
PDEase_I 717..950 CDD:278654 66/248 (27%)
Pde8bXP_008758892.1 PDE8 1..47 CDD:285793 8/26 (31%)
PAS_9 279..377 CDD:290162 18/159 (11%)
PAS 284..376 CDD:238075 16/153 (10%)
PDEase_I 614..861 CDD:278654 66/249 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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