DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and Pde2a

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_006507586.1 Gene:Pde2a / 207728 MGIID:2446107 Length:953 Species:Mus musculus


Alignment Length:827 Identity:260/827 - (31%)
Similarity:407/827 - (49%) Gaps:116/827 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 VQQKSPRSLSNSS--ASSLPECRRHLMDLDE------GELFMELIRDVANELDIDVLCHKILVNV 259
            :||:.|.::.|:|  ||...:..:...|.|.      ||||         :||...|..|:|..:
Mouse   210 LQQRRPEAVQNTSVDASEDQKDEKGYTDHDRKILQLCGELF---------DLDATSLQLKVLQYL 265

  Fly   260 GLLTHADRGSLFLAKGTPTNKYLVAKLFDVTQKTALKDAVTRASAEEIIIPFGIGIAGMVAQTKQ 324
            ...|.|....|.|.  :..|..|..|:        :.|.|.   .||:..|..:|..|.|.:.||
Mouse   266 QQETQATHCCLLLV--SEDNLQLSCKV--------IGDKVL---GEEVSFPLTMGRLGQVVEDKQ 317

  Fly   325 MINIKEAYKD------ARFNCEIDLKTGYKTNAILCMPICNYEGD-IIGVAQIINKTNGCMEFDE 382
            .|.:|:...|      ....||:        .|:||:|:.:...| ::.:|...||..|.. |.:
Mouse   318 CIQLKDLTSDDVQQLQNMLGCEL--------QAMLCVPVISRATDQVVALACAFNKLGGDF-FTD 373

  Fly   383 HDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNLECLVTKIMTEARELL 447
            .|..:.:....:.|..:.:...|:...:.....|.||.:|:::|...:::..|:.:|:||||.|.
Mouse   374 EDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLS 438

  Fly   448 KCERCSVFLVDLDCCEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANV 512
            ..|.|||||:|.:        :::.|                          :|: ||      |
Mouse   439 NAEICSVFLLDQN--------ELVAK--------------------------VFD-GG------V 462

  Fly   513 SRPSVSELSSSTLAQIAQFVATTGQTVNICDV------IEWVRDHNQIRAEDEIDSTQAILCMPI 571
            ......|:.......||..||||||.:||.|.      ...|.|....|       |:.|||.||
Mouse   463 VDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFR-------TRNILCFPI 520

  Fly   572 MNAQKKVIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLS 636
            .|..::|||||:|:||.||..|:..|..:..||:|:||:.|.::.:|:...:...:..:|.|.:.
Mouse   521 KNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMM 585

  Fly   637 YHATASQDQTEKLTQDVI--AEAESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQIPYD 699
            ||...|.|:..||..|.|  ..|...|..:||:|...|.:|||..|:|.|....|.::.::|...
Mouse   586 YHMKVSDDEYTKLLHDGIQPVAAIDSNFANFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCP 650

  Fly   700 VLCRWVLSVRKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRG 764
            .|.|:.|.|:|.||...||||.||.:|:...:.:.|..::..::.|:||..|.::|:||||||||
Mouse   651 TLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELSNYLEDIEIFALFISCMCHDLDHRG 715

  Fly   765 TNNAFQTKTESPLAILYTT--STMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILS 827
            |||:||..::|.||.||::  |.||.|||.|.:.|||:.|.|||...|.:||:.::..:...||:
Mouse   716 TNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILA 780

  Fly   828 TDLAMYFKKRNAFLELVENGEFDWQGEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFF 892
            ||||.:.:......::.|.| :|....:...||..::||:||:|...|.|:...|:|:|:..|||
Mouse   781 TDLAHHLRIFKDLQKMAEVG-YDRNNRQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFF 844

  Fly   893 DQGDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRN 957
            .|||||| .:..:|:.||||| |..:|::|:.|::.|.:|:|::|.|.||....|||....||.:
Mouse   845 SQGDLEK-AMGNRPMEMMDRE-KAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREH 907

  Fly   958 WQDLAEKVEM-GLTWIDHDTIDKPVEEFAACADEEIKDIEFTVTTLN 1003
            |..::.|..: ||.  .::::|...||:      |:.|::.|...:|
Mouse   908 WTKVSHKFTIRGLP--SNNSLDFLDEEY------EVPDLDGTRAPVN 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 38/165 (23%)
GAF 431..619 CDD:214500 59/193 (31%)
PDEase_I 717..950 CDD:278654 97/234 (41%)
Pde2aXP_006507586.1 GAF 253..400 CDD:214500 39/168 (23%)
GAF 422..571 CDD:214500 60/196 (31%)
PDEase_I 668..901 CDD:365964 98/235 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D114875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.