DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde8a

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_012814959.2 Gene:pde8a / 100497070 XenbaseID:XB-GENE-6051349 Length:876 Species:Xenopus tropicalis


Alignment Length:1051 Identity:199/1051 - (18%)
Similarity:362/1051 - (34%) Gaps:282/1051 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GAASPVEMSTTSSSSAATTSASSSKPLTNGANKTAISTAAGGVTPGAVPGPGSGAIPASSSSGNQ 74
            |.|..:.:    |.|.....:......:|..::|......|...||..       |.:|.:|..:
 Frog     2 GCAPSIHI----SDSRVVYHSGKESDDSNSPHQTNTLAQQGNSVPGLF-------IKSSHTSTYK 55

  Fly    75 VKLEHHHRQSNNNRPAVTNRSSETKLMTPTGSSSSPSQSPSQTQASIQTQTSQQDRLAKASTTAS 139
            |:.....:....|.|     |.|.::.:.|.||::     |.|.:|..|......|..:......
 Frog    56 VRANSSRKGRRENSP-----SMEAEINSSTNSSTN-----SSTNSSTSTAVKAAVREVQFGPMKL 110

  Fly   140 QQDVDEVARLF--EEKPEAFEKWLTERA--------PPEALSRLQEFIENRKP-------HKRPS 187
            :||..:|..:|  |:.......|..|:|        .||  :.|:.|::....       |.|..
 Frog   111 RQDQLQVLLVFAKEDSQSNGFCWACEKAGFKCNIARTPE--TALESFLDKHHEIIIIDHRHSRYF 173

  Fly   188 VTSDLFQQWMAASPT--------VQQKSPRSLSNSSASSLP-----------------ECRRHLM 227
            ....|.:...|..|:        |:::|.|    ..||.:|                 .|...|:
 Frog   174 DAEALCRSIRATKPSENTVIVAVVRRQSDR----DEASIMPLISAGFTRRYVENSNIMACYNELI 234

  Fly   228 DLDEGELFMELIRDVANELDIDVLCHKILVNVGLLTHADRGSLFLAKGTPTNKYLVAKLFDVTQK 292
            .|:.||:..:......|                                        .||...:|
 Frog   235 QLEFGEVLAQFKLRACN----------------------------------------SLFTTLEK 259

  Fly   293 TALKDAVTRASAEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDLKTGYKTNAILC--- 354
            :  ::|:...|.:.||               |.:|  .|::..         .||:.:.::.   
 Frog   260 S--QEAIEITSEDHII---------------QYVN--PAFEST---------MGYQKDELIGKEL 296

  Fly   355 --MPICNYEGDIIGVAQIINKTNGCMEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQI 417
              :||...:.|.:.......||....|                  ||.           |.:|:.
 Frog   297 TEVPINEKKSDFLDTINCCIKTGKEWE------------------GIY-----------YAKNKN 332

  Fly   418 LLNLARS-----IFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDCCEASHLEKIIEKPNQP 477
            ..|:.::     :|..:..:...|:                   :...|.:.:..||..|:....
 Frog   333 GDNIQQNVKIIPVFGHRGKIRHYVS-------------------ISRPCSDNNKAEKQCERVQAE 378

  Fly   478 ATRAIKSADSFEEKK--MRNRFTVLFELGGEYQAANVSRPSVSELSSSTLAQIAQFV--ATTGQT 538
            :...|::....:.:|  :..|.|......|..:.::.:.|..|:...|::|:|....  |...:.
 Frog   379 SQTDIQTCRHKDRRKGSLDVRSTTSRGSDGPAEFSHGALPGSSQRRHSSMARIHSMTIEAPITKV 443

  Fly   539 VNICDVIEWVRDHNQIRAEDEIDSTQAILCMPIMNAQKKVIGV---AQLINKANGVPFTDSDASI 600
            :||                  |::.|.....|:..|..:|:.:   .:|.:...|....|...:.
 Frog   444 INI------------------INAAQENSPSPVAEALDRVLEILRTTELYSPQLGTKDEDPHTND 490

  Fly   601 FEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLSYH---ATASQDQTEKLTQDVIAEAESYNL 662
            .....:..||    .::..|...|.|||   :..:|.|   |.:..|...::.|.:..|.:    
 Frog   491 LVGGLMTDGL----RRLSGNEYILSAKQ---VHPVSGHMILALSLSDIPPRIAQAMDNEED---- 544

  Fly   663 YSFTFTDFELVDDDTCRAV----LRMFMQCNLVSQFQIPYDVLCRWVLSVRKNYRPVK-YHNWRH 722
              :.|..|||......|.:    |:||.:..:..........|..|:..:..||.... |||..|
 Frog   545 --WEFDIFELEAATHKRPLVYLGLKMFARFGVCQFLNCSEATLRSWLHVIESNYHSSNAYHNSTH 607

  Fly   723 ALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTM 786
            :.:|.......|...::::.:..::.:..|:|...||:||.|..|:|.....|.|||||. |:.:
 Frog   608 SADVLHATAYFLCKERVKQSLDQIDEVAALIAATVHDVDHPGRTNSFLCNAGSELAILYNDTAVL 672

  Fly   787 EHHHF----------DQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFL 841
            |.||.          |:|         |||:.:...:||::.:.:...:|:|::..:|:..|.|:
 Frog   673 ESHHAALAFQLTTRDDKC---------NIFKNMERNEYRTLRQAIIDMVLATEMTKHFEHVNKFV 728

  Fly   842 ELV--------ENGEFDWQGEEKKDLLCG---------MMMTACDVSAIAKPWEVQHKVAKLVAD 889
            ..:        |||....:.|..|::|..         |::...|:|...:..|...:.|..:::
 Frog   729 NSINKPLAAVEENGGSIEEDEAVKNILTSPENRILIKRMLIKCADISNPCRALEQCIEWAGRISE 793

  Fly   890 EFFDQGDLEKLQLNTQPVAMMDRERKD-ELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLE 953
            |:|.|.|.||.:  ..||.|...:|.. .:||.|:.|:|.....::.. .|.|..:..|.:....
 Frog   794 EYFAQTDEEKRK--GLPVVMPVFDRNTCSIPKSQISFVDYFITDMFDA-WDAFADLPNLMQHLDN 855

  Fly   954 NRRNWQDLAEK 964
            |.:.|:.|.|:
 Frog   856 NFKYWKSLDER 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 20/163 (12%)
GAF 431..619 CDD:214500 28/194 (14%)
PDEase_I 717..950 CDD:278654 66/261 (25%)
pde8aXP_012814959.2 PDE8 1..48 CDD:400795 10/56 (18%)
PAS 151..360 CDD:225112 44/328 (13%)
PAS_9 262..360 CDD:404329 22/171 (13%)
PDEase_I 602..854 CDD:395177 66/263 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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