DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde6 and pde1c

DIOPT Version :10

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_031759760.1 Gene:pde1c / 100495383 XenbaseID:XB-GENE-994226 Length:762 Species:Xenopus tropicalis


Alignment Length:567 Identity:140/567 - (24%)
Similarity:218/567 - (38%) Gaps:139/567 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   611 GIHNTQMYENACKLMAKQKVALECLSY--HATASQDQTEKLTQDVIAEAESYNLYSFTFTDFELV 673
            ||...:||.....::.        |||  ...|.....:|.:.||.|..::...:...|..:||:
 Frog   195 GIFVERMYRRTSNMVG--------LSYPPAVIAVLKNVDKWSFDVFALNDASGDHGLKFIFYELL 251

  Fly   674 DDDTCRAVLRMFMQCNLVSQFQIPYDVLCRWVLSVRKNYRPVK--YHNWRHALNVAQTMFAMLKT 736
                        .:.:|:::|:||...|..:|.::...|...|  |||..||.:|.||:...|..
 Frog   252 ------------TRYDLINRFKIPISALVSFVEALEVGYTKHKNPYHNLIHAADVTQTVHYFLFK 304

  Fly   737 GKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMIL-N 799
            ..:..::|:|||..::.|...||.:|.||.|.|..:|.|..||||. .|.:|:||......:| :
 Frog   305 SGLVHWLTELEIFAMIFAAAVHDYEHTGTTNNFHIQTRSDSAILYNDRSVLENHHVSAAYRLLQD 369

  Fly   800 SEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFLELVENGEFDWQGEEKKDLLCGMM 864
            .|..||...||.:|:|.....|...:|:||::.:|.:    ::.::|.....:|.:|...|..::
 Frog   370 DEEMNILYNLSKDDWREFRALVIEMVLATDMSCHFHQ----IKQMKNALQQPEGIDKPKALSLLL 430

  Fly   865 MTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLE-KLQLNTQPVAMMDRERKDELPKMQVGFIDV 928
            .|| |:|..||.|::.|:....:.:|||.|||.| :|.|...|  :.|| ....:.:.|:||||.
 Frog   431 HTA-DISHPAKNWDLHHRWTMSLLEEFFRQGDKEAELGLPFSP--LCDR-NSTMVAQSQIGFIDF 491

  Fly   929 ICLPLYRVLCDTFPWI-TPL--------------------------------------------- 947
            |..|.:.||.|....| .||                                             
 Frog   492 IVEPTFTVLTDMIEKIVVPLIEEASRSGLTGFRRSSLNSITTSDVKRSSVKSTGSEGSASLNCSI 556

  Fly   948 ------------YEGTLENRRNWQDLAEKVEMGLTWIDHDTIDKPVEEFAACADEEIKDIEFTVT 1000
                        |:..|:||..|:..|.|          |..:|...|    |:|:.|       
 Frog   557 LTVDFKSFKCTWYDVVLQNREKWKTQAVK----------DADEKAKRE----AEEKDK------- 600

  Fly  1001 TLNCNQQSQHGSEDSHTPEHQRSGSRLSMKKTGALGKAVRSKLSKTLYNSMDGSKPKTS--LKLL 1063
              ....::....||..|.|::                   .|..|.|.|..:.:|...|  .||.
 Frog   601 --RDPDENHQEKEDKKTDENE-------------------DKNDKPLLNKHEPNKEHHSGDSKLT 644

  Fly  1064 ESHVSEDMDDKSPTSPSQPQASGSMGRMSASSSTSSAGGQMVDKSKK 1110
            ||........:.|.:.:|..:||..........|.|.  |:|....|
 Frog   645 ESSQGNINGTRLPNAKNQECSSGDQTNQEKLGDTDSK--QVVQNGIK 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500
GAF 431..619 CDD:214500 3/7 (43%)
PDEase_I 717..950 CDD:459723 82/293 (28%)
pde1cXP_031759760.1 PDEase_I_N 140..200 CDD:462497 2/4 (50%)
PDEase_I 285..507 CDD:459723 78/229 (34%)
Blue background indicates that the domain is not in the aligned region.

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