DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde8b

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_002940920.1 Gene:pde8b / 100490787 XenbaseID:XB-GENE-994976 Length:870 Species:Xenopus tropicalis


Alignment Length:1021 Identity:201/1021 - (19%)
Similarity:354/1021 - (34%) Gaps:256/1021 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SPVEMSTTSSSSAAT-------TSASSSKPLTNGANKTAISTAAGGVTPGAVPGPGSGAIPASSS 70
            ||.:.:|.|..:|||       |.|:.|.|        ::....|...|.|..|...|.......
 Frog    25 SPHQTTTISQGTAATLHGLFIKTDAADSIP--------SVLAYQGRYPPAARSGSRKGRRDQGPH 81

  Fly    71 SGNQVKLEHHHRQSNNNRPAVTNRSSETKLMTPTGSSSSP---SQSPSQTQASIQTQTSQQDRLA 132
            |..:.:.:..|              :..|.::.|.....|   :|.|.|.......:.||.|...
 Frog    82 SCIEAETQTSH--------------TSVKQVSSTELWLGPMRLTQDPIQVLLVFAKEDSQSDGFW 132

  Fly   133 KASTTASQQDVDEVARLFEEKPEAF--------------EKWLTERAPPEALSRLQEFIENRKPH 183
            .|...|..:  ..:||..|...|.|              .::|    ..||:.|   .|...||.
 Frog   133 WACDRAGYR--CNIARTPESAVECFLDKHHEIIVIDHRHSRYL----DAEAVCR---SIRATKPS 188

  Fly   184 KR-------PSVTSDLFQQWMAASPTVQQKSPRSLSNSSASSLPECRRHLMDLDEGELFMEL-IR 240
            :.       |.|.||  |:.|:..|.:.....|....:  ||:..|...|:.::.||:..:. :|
 Frog   189 EHTTILAVVPRVASD--QEEMSVLPLLNVGFNRRFVEN--SSMIACYNELIQIEHGEVRSQFKLR 249

  Fly   241 DVANELDIDVLCHKILVNVGLLTHADRGSLFLAKGTPTNKYLVAKLFDVTQKTAL---KDAVTRA 302
            .          |:.|.                                    |||   ::|:...
 Frog   250 S----------CNSIF------------------------------------TALDNCQEAIEIT 268

  Fly   303 SAEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDLKTGYKTNAILCMPICNYEGDIIGV 367
            |.:.||               |.:|  .|:         :...||....::...:..........
 Frog   269 SEDHII---------------QYVN--PAF---------ERMMGYHKEELIGKELTELPKSDKNR 307

  Fly   368 AQIINKTNGCMEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLNLARSIFEEQNNL 432
            |.:::..|.|:          ::...:.||.....:..: |:|::.:                  
 Frog   308 ADLLDTINTCI----------KKGKEWQGIYFARRKSGD-SIQQHVK------------------ 343

  Fly   433 ECLVTKIMTEARELLKCERCSVFLVDLDCCEASHLEKIIEKPNQPATRAIKSADSFEEKKMRNRF 497
               ||.::.:..::    |..|.:..|  |.::...|.|.|.|: ...|:..:.||..|..|...
 Frog   344 ---VTPVIGQGGKI----RHFVSIKKL--CNSNDNNKQIYKVNR-EDNALTESHSFRLKNRRKES 398

  Fly   498 TVLFELGGEYQAANVSRPSVSELSSSTLAQIAQFVATTGQTVNICDVIEWVRDHNQIRAEDEIDS 562
            ..:..:......|    ||:.....|::|:| ..:........:.::|...::::.:...:.:|.
 Frog   399 VDVRSITSRSSDA----PSLQNHRYSSMARI-HTMTIEAPITKVINIINAAQENSPVTVAEALDR 458

  Fly   563 TQAILCMPIMNAQKKVIGVAQLINKANGVPFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAK 627
            ...||            ...:|.:...|....|...|     .:..||      |.:...:|...
 Frog   459 VLEIL------------RTTELYSPQLGTKDEDPHTS-----DLVGGL------MTDGLRRLSGN 500

  Fly   628 QKVALECLSY-HATASQDQTEKLTQDVIAEAESYNLYSFTFTDFELVDDDTCRAVLRM------- 684
            :.|..:.:.: |:..|...|.......|||.....: |:.|..|||......|.::.:       
 Frog   501 EYVFSKNVHHSHSHLSVPITINDVPPCIAELLEDEV-SWDFNIFELEAVTIKRPLVYLGLKIFTC 564

  Fly   685 -----FMQCNLVSQFQIPYDVLCRWVLSVRKNYRPVK-YHNWRHALNVAQTMFAMLKTGKMERFM 743
                 |:.|:.|:        |..|:..|..||.... |||..||.:|.......|:...::..:
 Frog   565 FGACEFLNCSEVT--------LRSWLQLVEANYHASNAYHNSTHAADVLHATAFFLQQENVKGSL 621

  Fly   744 TDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGN-NIF 806
            ..|:.:..|:|...||:||.|..|:|.....|.||:||. |:.:|.||......:...:.. |||
 Frog   622 DQLDKVAALIAATVHDVDHPGRTNSFLCNASSELAVLYNDTAVLESHHAALAFQLTAKDNKCNIF 686

  Fly   807 QALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFLELV-------------ENGEFDW-----QG 853
            :.:....||::.:.:...:|:|::..:|:..|.|:..:             |..:|:.     ..
 Frog   687 KNMDRTQYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKPIAAEDSNSNSEGSDFECSTNIRNS 751

  Fly   854 EEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKD-E 917
            .|.:.|:..||:...||:...:|..:..:.|..:::|:|.|.|.||.|  ..||.|...:|.. .
 Frog   752 PENRILIKRMMIKCADVANPCRPLNLCIEWAGRISEEYFAQTDEEKRQ--GLPVVMPVFDRNTCS 814

  Fly   918 LPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRRNWQDLAE 963
            :||.|:.|||.....::.. .|.|..:..|.....:|.:.|:.|.|
 Frog   815 IPKSQISFIDYFITDMFDA-WDAFAHLPNLILHLTDNYKYWKSLDE 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 19/161 (12%)
GAF 431..619 CDD:214500 32/187 (17%)
PDEase_I 717..950 CDD:278654 66/253 (26%)
pde8bXP_002940920.1 PDE8 1..47 CDD:285793 7/21 (33%)
PAS_9 263..360 CDD:290162 20/158 (13%)
PAS 267..360 CDD:238075 19/154 (12%)
PDEase_I 595..847 CDD:278654 66/254 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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