DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde6 and pde6a

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_002936750.3 Gene:pde6a / 100489913 XenbaseID:XB-GENE-988755 Length:866 Species:Xenopus tropicalis


Alignment Length:799 Identity:257/799 - (32%)
Similarity:425/799 - (53%) Gaps:73/799 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 LMDLDEGELFMELIRDVANELDIDVLCHKILVNVGLLTHADRGSLFLAKGTPTNKYLVAKLFDVT 290
            |..::|.|:..:|||.....|:::.....:|..:..:..|||.|||:.:.......|..:||:|.
 Frog    52 LSSVEESEIVFDLIRGFQENLNLERCVFSVLKMMSFIIQADRMSLFMYRMRNGTAELATRLFNVN 116

  Fly   291 QKTALKDAVTRASAEEIIIPFGIGIAGMVAQTKQMINIKEAYKDARFNCEIDLKTGYKTNAILCM 355
            :...|.:.|. ....||:.|...|:.|.|||:|:::|:.:..:|:.|...:|..|.|.|.:||..
 Frog   117 KDATLDECVV-VPDSEIVFPLDTGVLGYVAQSKKLVNVSDVTQDSHFCSFVDNLTEYDTKSILAA 180

  Fly   356 PICNYEGDIIGVAQIINKTNGCMEFDEHDVEIFRRYLTFCGIGIQNAQLFEMSVQEYRRNQILLN 420
            |:.|.: |::.|...:||::| ..|.:.|.|:|.:||:|..:.::...|..:...|.||.||||.
 Frog   181 PVLNGK-DVVAVIMAVNKSDG-TNFTKTDEEMFLKYLSFANLVLKVYHLSYLHNCETRRGQILLW 243

  Fly   421 LARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVDLDCCEASHLEKIIEK------------ 473
            .|..:|||..::|....|.:...|..|.|:|.||.|:|:     :..::..::            
 Frog   244 SANKVFEELTDIERQFHKALYTVRAFLNCDRYSVGLLDM-----TKTKEFFDQWPILMGEVPPYS 303

  Fly   474 -PNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANVSRPSVSELSSSTLAQIAQFVATTGQ 537
             |..|..|.|    ||.:       .:.:.|.|:.:...:..|.....  |.::::..:||..|.
 Frog   304 GPKTPDGREI----SFYK-------VIDYILHGKEEIKVIPNPPADHW--SLVSKLPSYVAENGL 355

  Fly   538 TVNICDVIEWVRDHNQIRAEDEIDST----QAILCMPIMNAQKKVIGVAQLINKANGVPFTDSDA 598
               ||:::....|......:..:|.:    :.:|.|||:|.:::::|||...|:.:|.||.:.|.
 Frog   356 ---ICNIMNTSADEYFDFQKGPVDDSGWIMKNVLSMPIVNKKEEILGVATFYNRKDGKPFDEMDE 417

  Fly   599 SIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLSYHATASQDQTE---------------- 647
            .:.|:...|.|..:.||..||...||..::.:..:.::||...|.|:.:                
 Frog   418 VLTESLTQFLGWSVLNTDTYEKMNKLENRKDIYQDMVNYHVKCSNDELQIILKTKEIYNRLPEEC 482

  Fly   648 ------KLTQDVIAEAESYNLYSFTFTDFELVDDDTCRAVLRMFMQCNLVSQFQIPYDVLCRWVL 706
                  ::.|:.:.:.....:|.|.|:|..:.:....:..::::.:..:|.:|.||.:||.|::.
 Frog   483 EEEELYEILQEELPDPTEAEIYEFHFSDLPVSELFLVKCAIQIYYELEVVDKFHIPQEVLVRFLF 547

  Fly   707 SVRKNYRPVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVACLCHDLDHRGTNNAFQT 771
            ||.|.||.:.||||||..||.||||.:|.||.::|:.||||.:.::.|..|||:|||||||.:|.
 Frog   548 SVSKGYRKITYHNWRHGFNVGQTMFTLLMTGNLKRYYTDLEAMAMVTAAFCHDIDHRGTNNLYQM 612

  Fly   772 KTESPLAILYTTSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMKTVESAILSTDLAMYFKK 836
            |:..|||.|:.:|.:|.||.:....:|..|..||||.|:...|...:..::.||::||||:||||
 Frog   613 KSGHPLAKLHGSSILERHHLEFGKFLLKDESLNIFQNLNRRQYDHAIHMMDIAIIATDLALYFKK 677

  Fly   837 RNAFLELVE-----NGEFDWQ-----GEEKKDLLCGMMMTACDVSAIAKPWEVQHKVAKLVADEF 891
            |..|.::|:     ..|.||.     .:.:|:::..|||||||:|||||||::|.|||.|||.||
 Frog   678 RAMFQKIVDQSQTFTSEKDWTEYMMLEQTRKEIVMAMMMTACDLSAIAKPWDIQSKVALLVAAEF 742

  Fly   892 FDQGDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCDTFPWITPLYEGTLENRR 956
            ::|||||:..|...|:.||||.:.|||||:|.||||.:|..:|:......|.|.|:|:|.|.|::
 Frog   743 WEQGDLERTVLQQNPIPMMDRNKADELPKLQCGFIDFVCTFVYKEFSRFHPEIQPMYDGILNNKK 807

  Fly   957 NWQDLAEKVEMGLTWIDHD 975
            .|:.||::.:..:..::.|
 Frog   808 EWKKLADEYDAKMKTLEED 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500 46/158 (29%)
GAF 431..619 CDD:214500 45/204 (22%)
PDEase_I 717..950 CDD:278654 116/242 (48%)
pde6aXP_002936750.3 GAF 73..232 CDD:214500 46/161 (29%)
GAF 254..441 CDD:214500 47/207 (23%)
PDEase_I 558..802 CDD:395177 116/243 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56437
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.030

Return to query results.
Submit another query.