DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde6 and pde4a

DIOPT Version :10

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_031755243.1 Gene:pde4a / 100488846 XenbaseID:XB-GENE-5789473 Length:744 Species:Xenopus tropicalis


Alignment Length:629 Identity:148/629 - (23%)
Similarity:253/629 - (40%) Gaps:141/629 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   465 SHLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFELGGEYQAANVSRPS------------- 516
            :|.|.:|..|......:::|        :||.||:|         |||:.|:             
 Frog   159 AHAEDLIVTPFAQVLASLRS--------VRNNFTIL---------ANVTTPTNKRSPVMPQQTVC 206

  Fly   517 VSELSSSTLAQIAQFVATTGQTVNICDVIEWVRDHNQIRAEDEIDSTQAILCMPIMNAQK----- 576
            .:.||..|..|:|:      :|:   :.::|        ..|::::.|....:..|.:.|     
 Frog   207 KATLSEETYQQLAK------ETL---EELDW--------CLDQLETMQTYRSVSEMASNKFKRML 254

  Fly   577 --KVIGVAQLINKANGV------PFTDSDASIFEAFAIFCGLGIHNTQMYEN--------ACKLM 625
              ::..::::....|.|      .|.|....:          .|.:....|.        .|::.
 Frog   255 NRELTHLSEMSRSGNQVSEYISNTFLDKQNEV----------DIPSPTQKEREKKKKQQPMCQIS 309

  Fly   626 AKQKVALECLSYHATA-----------SQDQTEKLTQDVIAEAESYNLYSFTFTDFELVDDDTCR 679
            ..:|:      .|:::           ..||.|.|.:: :.....:.|..|...::......:| 
 Frog   310 GVKKL------MHSSSLTNSAIPRFGVKTDQEESLGKE-LDNLNKWGLNIFRVAEYSNNRPLSC- 366

  Fly   680 AVLRMFMQCNLVSQFQIPYDVLCRWVLSVRKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFM 743
            .:..:|.:..|:..|:||.|.|..:::::..:|. .|.|||..||.:|.|:...:|.|..::...
 Frog   367 TMYTVFQERELLKTFKIPVDTLMTYMMTLEDHYHADVAYHNSLHAADVTQSTHVLLSTPALDAVF 431

  Fly   744 TDLEILGLLVACLCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGNNIFQ 807
            ||||||..|.|...||:||.|.:|.|...|.|.||::|. .|.:|:||......:|..|..:|||
 Frog   432 TDLEILAALFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEENCDIFQ 496

  Fly   808 ALSPEDYRSVMKTVESAILSTDLAMYFKKRNAFLELVENGEFDWQG-------EEKKDLLCGMMM 865
            .|:....:::.|.|...:|:||::.:.........:||..:....|       .::..:|..|:.
 Frog   497 NLTKRQRQTMRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVH 561

  Fly   866 TACDVSAIAKPWEVQHKVAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPKMQVGFIDVI 929
            .| |:|...||.|:..:....:.:|||.|||.|:.: :...|  |.|:... .:.|.||||||.|
 Frog   562 CA-DLSNPTKPLELYRQWTDRILEEFFRQGDKERERGMEISP--MCDKHTA-SVEKSQVGFIDYI 622

  Fly   930 CLPLYRVLCD-TFPWITPLYEGTLENRRNW--------------------QDLAEKVEMGLTW-- 971
            ..||:....| ..|....:.: |||:.|:|                    :...||.:..||.  
 Frog   623 VHPLWETWADLVHPDAQDILD-TLEDNRDWYQGMIPQSPSPPPDDPDKDEEACIEKFQFELTLEE 686

  Fly   972 ----IDHDTIDKPVEEFAACADE--EIKDIEFTVTTLNCNQQSQ 1009
                .|.|......||...|..|  ||::.|....|::..|..|
 Frog   687 EAEDSDKDRNSGIEEEDGNCLHEAPEIQEPEEEFMTMHEGQAEQ 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500
GAF 431..619 CDD:214500 30/179 (17%)
PDEase_I 717..950 CDD:459723 77/242 (32%)
pde4aXP_031755243.1 PDE4_UCR 166..281 CDD:465648 25/148 (17%)
PDEase_I 405..645 CDD:459723 77/244 (32%)
Blue background indicates that the domain is not in the aligned region.

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