DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde6 and pde4c

DIOPT Version :9

Sequence 1:NP_001262566.1 Gene:Pde6 / 41760 FlyBaseID:FBgn0038237 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_004911040.1 Gene:pde4c / 100380081 XenbaseID:XB-GENE-1002336 Length:801 Species:Xenopus tropicalis


Alignment Length:693 Identity:154/693 - (22%)
Similarity:275/693 - (39%) Gaps:132/693 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   466 HLEKIIEKPNQPATRAIKSADSFEEKKMRNRFTVLFEL----------GGEYQAA---NVSRPSV 517
            |.|.:|..|......::::        :|:.|.:|..|          |....:|   |:|..:|
 Frog   150 HGEDMIVTPFAQVLASLRT--------VRSNFAMLTHLQDRVSNKRSSGSNQPSACKPNLSEDAV 206

  Fly   518 SELSSSTLAQIAQFVATTGQTVNICDVIEWVRDH-NQIRAEDEIDSTQAILCMPIMNAQKKVIGV 581
            .:|:..||.:                 ::|..|. ..::....:....:.....::|  :::..:
 Frog   207 QKLAIETLEE-----------------LDWCLDQLETLQTRHSVSEMASNKFKRMLN--RELTHL 252

  Fly   582 AQLINKANGV------PFTDSDASIFEAFAIFCGLGIHNTQMYENACKLMAKQKVALECLS---- 636
            ::.....|.|      .|.|..               |..::.....|...|:|..:..:|    
 Frog   253 SETSRSGNQVSEYISSTFLDKQ---------------HEVEIPTPVSKEKDKKKRPMSQISGVKK 302

  Fly   637 -YHATASQDQT-----EKLTQDVIAEAESYNLYSFTFTDFELVDDDTCR----AVLRMFMQCNLV 691
             .|:::..:.:     .|..|:|....|..|:..:....|::.:....|    .:..:|.:.:|:
 Frog   303 LTHSSSFSNCSIPRFGVKTEQEVPLAKEVENINKWGLDIFKVAEYSGNRPLTVIMYSIFQERDLL 367

  Fly   692 SQFQIPYDVLCRWVLSVRKNYR-PVKYHNWRHALNVAQTMFAMLKTGKMERFMTDLEILGLLVAC 755
            ..|.||.|....:::::..:|. .|.|||..||.:|||:...:|.|..:|...|||||:..:.|.
 Frog   368 KTFHIPVDTFITYMMTLEDHYHSDVAYHNNIHAADVAQSTHVLLSTPALEAVFTDLEIMAAIFAS 432

  Fly   756 LCHDLDHRGTNNAFQTKTESPLAILYT-TSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRSVMK 819
            ..||:||.|.:|.|...|.|.||::|. .|.:|:||......:|..|..:|||.|:.:..:::.|
 Frog   433 AIHDVDHPGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQEENCDIFQNLTKKQRQTLRK 497

  Fly   820 TVESAILSTDLAMYFKKRNAFLELVENGEFDWQG-------EEKKDLLCGMMMTACDVSAIAKPW 877
            .|...:|:||::.:.........:||..:....|       .::..:|..|:..| |:|...||.
 Frog   498 MVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYSDRIQVLQNMVHCA-DLSNPTKPL 561

  Fly   878 EVQHKVAKLVADEFFDQGDLEKLQ-LNTQPVAMMDRERKDELPKMQVGFIDVICLPLYRVLCD-T 940
            |:..:....:..|||.|||.|:.: :...|  |.|:... .:.|.||||||.|..||:....| .
 Frog   562 EIYRQWTDRIIVEFFHQGDREREKGMEISP--MCDKHNA-SVEKSQVGFIDYIVHPLWETWADLV 623

  Fly   941 FPWITPLYEGTLENRRNW---------------QD------LAEKVEMGLTWIDHDTIDKPVEEF 984
            .|....:.: |||:.|.|               ||      ..:|.:..||..:....|...|:.
 Frog   624 HPDAQEILD-TLEDNREWYQSMIPQSPSPPPEEQDPDRGNAAGDKFQFELTLEEEGESDTEQEDT 687

  Fly   985 AACADEEIKDIEFTVTTLNCNQQSQHGSEDSHTPEHQRSGSRLSMKKTGALG------KAVRSKL 1043
            .:..|||..|     :.::....|...|:::    .|.|...|.|..:..|.      |:..:|.
 Frog   688 ESPIDEENSD-----SKIHATDDSAQASDEA----EQSSPVDLCMTVSSKLDHLEIPPKSTLTKQ 743

  Fly  1044 SKTLYNSMDGSKPKTSLKLLESHVSEDMDDKSPTSPSQPQASG 1086
            .|.|  :.|..|......:.:..||.  ...:|.:.::.:.:|
 Frog   744 KKIL--NFDNLKLAGERTIQQKEVSS--SHATPANSARQEGTG 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde6NP_001262566.1 GAF 247..406 CDD:214500
GAF 431..619 CDD:214500 24/172 (14%)
PDEase_I 717..950 CDD:278654 77/242 (32%)
pde4cXP_004911040.1 PDEase_I 394..635 CDD:278654 78/245 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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