DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-c and Gmip

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_030099716.1 Gene:Gmip / 78816 MGIID:1926066 Length:1002 Species:Mus musculus


Alignment Length:1206 Identity:245/1206 - (20%)
Similarity:391/1206 - (32%) Gaps:403/1206 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1252 HSLDH--YHSPQPLVHP----RKVLPIHHHALKSKERGQLSL-----------VLRQEPFQSLLS 1299
            |.|.|  .|.|.|.:.|    ||   .:....:|.:..::||           .:|:|..:...:
Mouse     6 HWLAHVFLHFPPPELTPAPEGRK---RYSDIFQSLDNLEISLGNVTFDPLAGDPVRREDLEPDKA 67

  Fly  1300 PSATAANQLHHFVELPSPSSASLHSGLGDSGGIQELCTKSNSAPMLLKEREMSRRFDNFE-AQHL 1363
            .:||...:        ..|.||....|...|            |..|.|.|:..|....: ....
Mouse    68 DTATVVTE--------ENSEASSWRDLSPEG------------PAPLTEEELDLRLIRTKGGVDA 112

  Fly  1364 TLRYSRSQSDRYLAEIEA---------VEACKWLRAAGFPQYAQMYEDHQFPIDLNNVAKDHTNL 1419
            .|.|:::.| ||..|:.|         :|..|.:..........:.:..|.|:.....    ..|
Mouse   113 ALEYAKAWS-RYAKELLAWTDKRANYELEFAKSIMKLAEAGKVSILQQSQMPLQYIYT----LFL 172

  Fly  1420 END-QLQSLYRRLCVLNRCATMRLDQSHKPQTPQQKE-ESDDENFALSEHWTFQPHIRRWSRIGE 1482
            |:| .|.:|     .|...|..:.|. ::|...::.| |...:.|  .|.|     ::...|:.|
Mouse   173 EHDLSLGAL-----ALETVAQQKRDY-YQPLAAKRMEIEKWRKEF--KEQW-----LKEQKRMNE 224

  Fly  1483 MGLELPPPGLLSLNVEKTESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGR 1547
            ....|....|..:...:...:..:.||    ||                 |...:|.|......|
Mouse   225 AVQALRRSELQYIQRREDLRARSQGSP----ED-----------------PPSQASPGSNKQQER 268

  Fly  1548 LRRSGSERIKDQAK---------ALLRRVESIK-----SRRRKRQNRENVVISGPTVL---DLSQ 1595
            .|||..|.   |||         |.:|...|.:     ::||...:...:|:.|..||   .|..
Mouse   269 RRRSREEA---QAKAHEAEALYQACVREANSRQQDLETTKRRIVSHVRKLVLQGDEVLRRVTLGL 330

  Fly  1596 F--------------------------GQRSS----LRKPDAVYSTPPSPS-----ALSPMHTFP 1625
            |                          |||..    ..:|.|  ..||||:     ..:.:|:||
Mouse   331 FELRGAQAERGPRSFSALAECCVPFEPGQRYQEFVRTLQPGA--PPPPSPAFCFQEFTAVVHSFP 393

  Fly  1626 ---KAPFFGNDLKVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLHFFSSPMSQLKE-GKSDDSSS 1686
               |..|.|   .:|...:     ...||:..|....|:.:..:     |.|.:.. |...:|.|
Mouse   394 QDTKKKFSG---PLPPRLE-----EEGSPEPGPWEVASLGSQGI-----PGSDVDSVGGGSESRS 445

  Fly  1687 YYSDSQESSTGGKLSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKK 1751
            .  ||..||.|        :.|||.:    |....|..|..:..:                    
Mouse   446 L--DSPTSSPG--------AGARRLV----KASSTGTESSDDFEE-------------------- 476

  Fly  1752 LTRGGSLNLGKDPKKRDGFRS---SSFRSRSTSRKEAKNDEDTAGATTNGGSKRQPVV--RWHSF 1811
                      :||...||..:   |.||..:.|         ||..|......|.|..  ...:|
Mouse   477 ----------RDPDLGDGIENGVGSPFRKWTLS---------TAAQTHRLRRLRGPAKCRECEAF 522

  Fly  1812 -----QMEERPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMERYCPSH 1871
                 :.||    .|..|..:.:|                         .|:.|.||  |..|:.
Mouse   523 MVSGTECEE----CFLTCHKRCLE-------------------------TLLILCGH--RRLPAR 556

  Fly  1872 RSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRK 1936
            .|                      :|||..|.:.:...:.:|..:......::..||...||:|.
Mouse   557 MS----------------------LFGVDFLQLPRDFPEEVPFVITRCTAEIEHRALGLQGIYRV 599

  Fly  1937 SGGKSRIMKLREQIEVTDSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQH 2001
            ||.:.|:.:|.:..|...:..|...    ...:|:..:||::.:||.:.::...:.:.|:::.:.
Mouse   600 SGSRVRVERLCQAFENGRALVELSG----NSPHDITSVLKRFLQELTDPVVPFHLYDAFISLAKT 660

  Fly  2002 L------------PAEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCL 2054
            |            |:...:.:::..::.|||.|...|..|:..|..|||..::|:|::||||:..
Mouse   661 LHADPGDDPGTPNPSPEIIRSLKTLLVQLPDSNYSTLRHLVAHLFRVAARFEENKMSANNLGIVF 725

  Fly  2055 AQSIFHSSISTGSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIY-----TAAK 2114
            ..::...  ..|..:..|||           :..|.::....:.:.|:|.||:||:     ..|.
Mouse   726 GPTLLRP--PDGPRATGASP-----------VACLLDSGHQAQLVEFLIVHYEQIFGMDELPLAS 777

  Fly  2115 EKLSK-------CNFSYMEESKPLPLEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINS 2172
            |.|::       |    :|.|...|...|.:..|                           .:..
Mouse   778 EPLTQDPGLAPAC----LESSPQHPASLLAQDTQ---------------------------PLTI 811

  Fly  2173 LNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPK----------EVLEFVIKQRASWDTNLLQCQT 2227
            ..|||.|       ..|...|.:| .|:..|.|          .||.|           .||..|
Mouse   812 ALDSSPD-------PKHHSALEKC-PEVTPPEKSLNRDFAIGSHVLGF-----------FLQLAT 857

  Fly  2228 VKKLDDRTEIYQYALDGQLT-TDFCVLRSWQTDLPRGACVIVETSIDHAKAKPL---FGAVRGVV 2288
            ::: |.|.|..:...||... :..|     ..||..||     .|..|...:|:   .|.||.|.
Mouse   858 LQR-DQREEEVEDTRDGAGDGSSHC-----PEDLALGA-----QSRGHFSRQPVKYSRGGVRPVT 911

  Fly  2289 --LASRYLI--EPCGSGRSRV--MHLARVDVKGKTP 2318
              |:|..|:  :.|......|  :|...:.|:|..|
Mouse   912 HQLSSLALVASKLCEETPVTVSAVHRGSLRVRGLGP 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 11/59 (19%)
RhoGAP_DLC1 1893..2116 CDD:239840 52/239 (22%)
SRPBCC 2148..2343 CDD:301327 42/191 (22%)
GmipXP_030099716.1 BAR 124..324 CDD:386243 47/240 (20%)
C1 503..548 CDD:197519 10/73 (14%)
RhoGAP 560..763 CDD:383032 47/219 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3060
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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