DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-c and stard13

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_031751944.1 Gene:stard13 / 734093 XenbaseID:XB-GENE-478898 Length:1349 Species:Xenopus tropicalis


Alignment Length:1499 Identity:426/1499 - (28%)
Similarity:677/1499 - (45%) Gaps:360/1499 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1061 GAVDEDNNSTSSSS-----ACEEATGVLSSGKSGISLDSSGLDNDNNESGIGTA---TPPKDMSH 1117
            |.:::::||..|.|     ..|.......:|::..|..   ::.::|...:||.   .||     
 Frog     3 GLLEDEDNSFYSMSYMHFLTAENMPYQFPAGRNEYSRQ---MEINDNILAMGTKIANLPP----- 59

  Fly  1118 YWKSHHLQHHH----HHHHRKC---TGSAQDNESVSSL--------------------------- 1148
                  ::.||    ....|.|   .|....:|.|...                           
 Frog    60 ------IKEHHVTLTETEERPCCVMVGKEFKSEEVGGAILYPPLAETNHFLAANANAKTRYIQVV 118

  Fly  1149 ----EALRKMKFQKSGSVASSDDPDVLEVLSQCGSGGEANESQDDMLDEEKDKMSKSQDYDEIWD 1209
                .|:....|....|:..:..|::|.           :|:.:|           .:.|||   
 Frog   119 EHEPSAILFRDFSLDSSIPGAIAPNILN-----------SETSED-----------KEVYDE--- 158

  Fly  1210 CDCTDGDASSASGGGGVTATPVILRRKYTAPPPILVPRTQRSHSLDHYHSPQPLVHPRKVLPIHH 1274
                |.:..|...|...|..|                         ||.|..|.:...:..||..
 Frog   159 ----DEEEESDENGDVFTELP-------------------------HYESMFPGLRRNQCHPISL 194

  Fly  1275 HALKSKERGQLSLVLRQEPFQSLLSPSATAANQLHHFVELPSPSSASLHSGLGDSGGIQELCTKS 1339
            :.         :::...|....:||.:.:.|.|             :|:.|.|::...:......
 Frog   195 NG---------NIIFNFEDVCQILSSTQSGAEQ-------------TLNEGEGNNLMEERYRWSE 237

  Fly  1340 NSAPMLLKEREMSRRFD----------NFEAQHLTLRYSRS-QSDRYLAEIEAVEACKWLRAAGF 1393
            :...:::|..:::...:          |......:.:.:.| .:||...|:||.|||.|||||||
 Frog   238 SMTCLMMKLEQLNVDIEDAVMAGVSSLNLSPTDCSTQLANSLVTDRGSPELEAKEACDWLRAAGF 302

  Fly  1394 PQYAQMYEDHQFPIDLNNVAKDHTNLENDQLQSLYRRLCVLNRCATMRLDQSHKPQTPQQKEESD 1458
            |||||:|||.|||||:.:|.:||..|:.|.::.|.|||..||:||:|:||.|.:   .::.|:||
 Frog   303 PQYAQLYEDSQFPIDIASVKRDHDFLDRDHVEPLCRRLKTLNKCASMKLDVSFQ---RKKSEDSD 364

  Fly  1459 DENF-ALSEHWTFQPHIRRWSRI----------------GEMG---------LELPPPGLLSLNV 1497
            :|:. |:|:.|.||...|:|||:                |||.         .:|..|.:.|::.
 Frog   365 EEDLCAISDKWRFQRLSRQWSRVDDIDSLFERSERLGSSGEMKNTTSSESVLTDLSEPEICSIHS 429

  Fly  1498 EKTESS-------SKESSPDRFE-------EDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGRL 1548
            ..:..|       ...:|.:.||       .|...:|::.|.       |.|.|       .|:|
 Frog   430 GSSGGSDCRCSYVGNSASRETFECADTMCIHDPNSMTILPPW-------PKDVS-------DGKL 480

  Fly  1549 RRSGSERIKDQAKALLRRVESIKSR----RRKRQNRENVVISGPTVLDLS--------------- 1594
            .....:...::.|..|:.:.:::|:    :.|...|...::....:|.|.               
 Frog   481 NAKNEKPAHNKTKTFLKCMGTLRSKGTYGKSKGLQRTGAIVISEPILQLEPEPLKPIPQLEPDPL 545

  Fly  1595 ----------------QFGQRSSLRKPDAVYSTPPSPSALSPMHTF---PKAPFFGNDLKV---- 1636
                            .|....:|.....:.::..|...|..|...   .:...:..|:.|    
 Frog   546 KTMSCVGNGQVQDSSMNFTATGNLNSVSEIQTSTESSPCLKEMQALEPNKRGGMYLEDIDVFTDL 610

  Fly  1637 ------PSHSDNFLS--------PNRSSPKRTPTTPRSMRTSPLHFF--------SSPMSQLKEG 1679
                  .:|:.:|.|        |....|...|........||...|        ..|:|:.|..
 Frog   611 GTAKAGHNHNHDFHSQEDLVVHIPKDHKPGTFPKALSIESLSPTENFYGVNWRSGGIPLSRQKGI 675

  Fly  1680 KSDDSSSYYSDSQESSTGGKLSLRKPSKARRFLQRTGKV-----DDIGAHSD-----------SE 1728
            ::.:....   |...|.|.:||:............||.:     ||:..|.|           |.
 Frog   676 RAKEPRIM---SSRCSRGSRLSVYDNVPGSHLYASTGDLMDLDRDDLFPHLDDVLQHINGLQQSV 737

  Fly  1729 CHQGRKLL--IKDANSNTTEVKVKKLTRGGSLNLG-KDPKKRDGFRSSSFRSRSTSRKEAK---- 1786
            .|..:.::  ::|.:.:..|        .|:.|.. .:|...| |..:|.....|:..:.:    
 Frog   738 YHWSKDIMPDLQDDDFSVGE--------SGTSNFHLPNPMSMD-FEGNSISDGRTTPSDMERDAT 793

  Fly  1787 --NDEDT----------AGATTNGGSKRQPVVRWHSFQMEERPNMIFRKCFSKKIEPLQEDAG-G 1838
              ||.||          .||:....::|   .||.|||:..:                |..:| .
 Frog   794 SLNDSDTTGTRERRDSGVGASLTRTNRR---FRWSSFQLSHQ----------------QSSSGAS 839

  Fly  1839 MPFAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLM 1903
            :..:..|||||.:::|.:|:.||..||:|..|::.||.|.:|||:|::|.||:|||.:|||||::
 Frog   840 LQISNQSAGQLNLLQKFSLLRLTAIMEKYSLSNKHGWTWSVPKFMKRMKGPDFKDKTIFGVPLMV 904

  Fly  1904 ILQRSGQTLPLAVRAAFRWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQA 1968
            .:||:||.||.:::.|.|:|:.:.|||||:|||||.||||..||:..|.........|    |.|
 Frog   905 HVQRTGQPLPQSIQQALRFLRSHCLDQVGLFRKSGVKSRIQALRQMNETASENVSYED----QCA 965

  Fly  1969 YDVADMLKQYFRELPESLLTTKMSETFVAIFQHLPAEVRLDAVQCAVLLLPDENREILYVLLEFL 2033
            ||||||:||:||:|||.|||:|:.|||:.|:|::|.:.||.|||.|::|:.|||||:|..||.||
 Frog   966 YDVADMMKQFFRDLPEPLLTSKLGETFLHIYQYVPKDQRLQAVQSAIMLMSDENREVLQTLLCFL 1030

  Fly  2034 TIVAANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPR--RKGKGSGMPDMKELAEAKASH 2096
            :.| .:.::||||..||.||||.|:||.::    .....|||  :|...:|.||.|:|.|..|:.
 Frog  1031 SDV-TSVEENQMTPMNLAVCLAPSLFHLNL----LKKDNSPRAIQKKYATGRPDQKDLNENFAAT 1090

  Fly  2097 ECLSFMIEHYKQIYTAAKEKLSKCNFSYME-ESKPLPLEALGEGMQFHNWRGYLYECTSATI--- 2157
            :.|:.||....:::....:.:::...||:| :...|.:|.||:  |.....|.:.....:||   
 Frog  1091 QGLAHMIMECNRLFEIPHDVIAQSRNSYVEADVHVLTMEELGK--QLEEEGGSVSTYFESTIQGL 1153

  Fly  2158 -KEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTN 2221
             ||.:||.:||.|::|..::  |:||||||||:.||:|:.|.|:|.||..||..::::|..||.:
 Frog  1154 QKEAKEKFKGWMSLSSAENT--DLAYKKVGDGNSLRVWKVSVEVEAPPSVVLNRILRERQLWDDD 1216

  Fly  2222 LLQCQTVKKLDDRTEIYQYALDGQL---TTDFCVLRSWQTDLPRGACVIVETSIDHAKAKPLFGA 2283
            |||.:.::.||::||:|||.|:...   :.||.|||||:||||:|.|.:...|::|.:|. |.|.
 Frog  1217 LLQSKVIESLDNQTEVYQYVLNSMAPHPSRDFVVLRSWRTDLPKGICALAAVSVEHDEAH-LIGG 1280

  Fly  2284 VRGVVLASRYLIEPCGSGRSRVMHLARVDVKGKTPEWYNKNYGHICSHYLSRIRLAFKHVA-DGP 2347
            ||..||.:||||||||||:|::.|::|||:||.:||||||.:||:|:....|||.:|:.:: :||
 Frog  1281 VRAAVLDTRYLIEPCGSGKSKLTHISRVDLKGHSPEWYNKCFGHLCASEALRIRNSFQPISTEGP 1345

  Fly  2348 ESKV 2351
            |:|:
 Frog  1346 ETKI 1349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 36/58 (62%)
RhoGAP_DLC1 1893..2116 CDD:239840 104/224 (46%)
SRPBCC 2148..2343 CDD:301327 95/201 (47%)
stard13XP_031751944.1 SAM_DLC2 287..350 CDD:188991 39/62 (63%)
RhoGAP_DLC1 894..1109 CDD:239840 104/223 (47%)
SRPBCC 1136..1340 CDD:417480 96/206 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2979
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001209
OrthoInspector 1 1.000 - - otm47768
Panther 1 1.100 - - O PTHR12659
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X752
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.100

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