DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-c and gmip

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_694162.5 Gene:gmip / 565801 ZFINID:ZDB-GENE-130530-823 Length:1017 Species:Danio rerio


Alignment Length:1181 Identity:229/1181 - (19%)
Similarity:396/1181 - (33%) Gaps:331/1181 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1270 LPIHHHALKSKERGQLSLVLRQEPFQSL-LSPSATAANQL---HHFVELPSPSS-ASLHSGLGDS 1329
            :|:.|     .|..:.|.:||.  |.:| ||...:..::|   ...:.||..|: .:|::.|.|.
Zfish    18 IPVRH-----SETKRYSEILRD--FDALDLSLKCSTVDELLQEADSLSLPDTSADTTLNADLDDI 75

  Fly  1330 GGIQ-----ELC----TKSNSAPMLLKEREMS--RRFDNFEAQHLTLRYSRSQSDRYLAE----- 1378
            .|..     ::|    .|......:.::.::|  ...|..|   |.|:|::... ||..:     
Zfish    76 TGEDVEDEVKICREEEEKDEGTLSIAQDADLSLCHCEDGVE---LALQYAKMWC-RYAKDLLTWM 136

  Fly  1379 -----IEAVEACKWLRAAGFPQYAQMYEDHQFPI----------DLNNVAKDHTNLENDQLQSLY 1428
                 :|...|...:|||...:.....:| ..|:          ||...|....:.||.| |..|
Zfish   137 DKRISLEQEFAKSIMRAADAAKSCVAQQD-MMPLQNIYTQALEHDLKTSASAKQSAENIQ-QRCY 199

  Fly  1429 RRLCVLNRCATMRLDQSHKPQTPQQKEESDDENFALSEHWTFQPHIRRWSRIGEMGLELPPPGLL 1493
            :.|.. .|....:..:..|.|..::::...|...||..  ..|.:::|...:             
Zfish   200 QALSA-KRNEIDKWRREFKEQWSKEQKRMHDAVSALKR--ARQQYMQRCEEL------------- 248

  Fly  1494 SLNVEKTESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGRLRRSGSERIKD 1558
                ||.::.:.::     |||..|...:                     |..|..|..::....
Zfish   249 ----EKAKAMTAKA-----EEDTGGYKTL---------------------DKRRKSRDDAQTKVT 283

  Fly  1559 QAKALLRRVESIKSRRRKRQNR---------ENVVISGPTVLDLSQFGQRSSLRKPDAVYSTPPS 1614
            :.:...|:..|..:..:|..::         ..::..|.|||..:.....:..|:     .|.|.
Zfish   284 ETEMQYRQCVSEANNHQKELDKVKRKIIVHIRKLICQGDTVLKEATMKMFNFQRQ-----QTEPV 343

  Fly  1615 PSALSPMHTF-----PKAPFFGNDL--KVPSHS------DNFLSPNRSSPKRTPTTPRSMRTSPL 1666
            |.|...:...     |..|:....|  ::|...      ..|:..||.||   ||..|.......
Zfish   344 PLAYQNLQLTCAPCEPGEPYLHYILGKRLPDQPPQIYIFQEFIPQNRRSP---PTGRRKQSNIQQ 405

  Fly  1667 HFFSSPMSQLKEGKSDDSSSYYSDSQESSTGGKLSLRKPSKARRFLQR---TGKV--DDIGAHSD 1726
            ..::.| ..||...|.........|...|||...||..|:...|.|.:   ||.:  ||:.....
Zfish   406 DLYALP-DDLKHSSSLVDGRRPGQSDRDSTGSLESLSSPAHGTRKLPKASSTGTMSSDDLDEKDP 469

  Fly  1727 SECHQGRKLLIKDANSNTTEVKVKKLTRGGSLNLGKDPKKRDGFRSS-SFRSRSTSRKEAKNDED 1790
            .|..:|    :.|:|..|.                   |.|...|:: :.|.|....|..|..:.
Zfish   470 EESEEG----LSDSNGMTC-------------------KPRSASRAALTHRLRKMKSKMVKCKQC 511

  Fly  1791 TAGATTNGGSKRQPVVRWHSFQMEERPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKL 1855
            ......||            .:.||....:.|||                   :...||:     
Zfish   512 DNYILVNG------------IECEECGLAVHRKC-------------------LEVCQLE----- 540

  Fly  1856 ALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQTLPLAVRAAF 1920
                        | .||.|:                    |||.....:.:.:..::|..|....
Zfish   541 ------------C-EHRRGF--------------------VFGTEFSSLPRETQDSVPFVVLRCT 572

  Fly  1921 RWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQAYDVADMLKQYFRELPES 1985
            ..::..||...|::|.||.|.|::||.:..|:.....:..|:    ..:|:..:||.:|:||||.
Zfish   573 EEIENRALGVQGVYRISGSKPRVLKLCQAFEIQKDQVDLSDL----SPHDITSVLKHFFKELPEP 633

  Fly  1986 LLTTKMSETFVAIFQHL------------PAEVRLDAVQCAVLL--LPDENREILYVLLEFLTIV 2036
            |||..:...|:|:.:.:            |..|.....:...|:  ||..|...:..::..|..|
Zfish   634 LLTFDLYNDFIAVGKEIQRLSEKDHAAESPGIVENIVRRLRELIGRLPVCNNITVQHMMAHLNRV 698

  Fly  2037 AANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPRRKGKGSGMPDMKELAEAKASHECL-- 2099
            |...:.|:|:..|||:....::....:|                   .|:..:|..:.|::.|  
Zfish   699 AEQFEDNKMSPGNLGIVFGPTLLRPLVS-------------------GDVSMIALLETSYQALLV 744

  Fly  2100 SFMIEHYKQIYTAAKEK-----------------LSKCNFSYMEESKPLPLEALGEGMQFHNWRG 2147
            .|||.:|.|::.:|...                 .:.|..|....|...|.....|..:      
Zfish   745 EFMISNYDQVFGSATRSGTPPPPPPTAPLPETPPRATCPVSPSSSSSQDPTATSRERPR------ 803

  Fly  2148 YLYECTSATIKEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVI 2212
               ...:.|||  |:.:.|:.|..|.::.::|....:..:...|.: ..:...:|.|.:..|..:
Zfish   804 ---SLENRTIK--RDSSEGYISDKSSSNEAMDQLSPEANERAVLAM-SATASPQGLPGQAAENQL 862

  Fly  2213 KQRASWDTNLLQCQTVK--------------KLDDRTEIYQYALDGQLTTDFCVLRSWQTDLPRG 2263
            :.|:.  |:|.: |.||              ....|.|....:.:|.::......||...:..:.
Zfish   863 QTRSR--THLSR-QPVKYYRQGSAGAQSRKTSAQLRDENISVSGEGLVSGSADSSRSSSPEPLKT 924

  Fly  2264 ACVIVETSIDHAKAKPLFGAVRGV----------VLASRYLIEPCGS---------GRSRVMH-L 2308
            ...:.||.:...|.:...||..||          ..||.::.|  |:         ||.|::. |
Zfish   925 LLCLQETVVPQDKTESQTGAHAGVQRTVSQESVQAGASSFVRE--GNTNQSNNTLRGRERLIRSL 987

  Fly  2309 ARVDVKGKTPE 2319
            .|..|:.||.:
Zfish   988 RRRSVEEKTSQ 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 16/68 (24%)
RhoGAP_DLC1 1893..2116 CDD:239840 55/238 (23%)
SRPBCC 2148..2343 CDD:301327 42/206 (20%)
gmipXP_694162.5 BAR 129..337 CDD:299863 40/255 (16%)
C1 499..541 CDD:197519 12/89 (13%)
RhoGAP 549..750 CDD:295372 51/223 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3060
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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