DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-c and gmip

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_031753686.1 Gene:gmip / 448355 XenbaseID:XB-GENE-977540 Length:950 Species:Xenopus tropicalis


Alignment Length:1097 Identity:220/1097 - (20%)
Similarity:368/1097 - (33%) Gaps:342/1097 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1283 GQLSLVLRQEPFQSLLSPSAT------AANQLHHFVELPSPSSASLHSGLGDSGGIQ-------- 1333
            |:||.:|:...|.....|:..      |...|.|.|.:...|:.|     |.|.|.:        
 Frog    40 GKLSALLQSVVFLLYKYPALNSRCVQEAMTTLIHGVRVSDTSTPS-----GSSEGRKRFSEIFRD 99

  Fly  1334 ----ELCTKSNSAPMLLKEREMSRRFDNFEAQHL---TLRYSRSQSDRYLAEIE--------AVE 1383
                |:...:.:..|.|.:.|......:.|.:.|   .|..||:.:| ::.|.:        .||
 Frog   100 LDALEISLGNETVEMFLNDSEQLESHPDEEEESLISTPLELSRTSAD-HVEEADDVLLHSEGGVE 163

  Fly  1384 A--------CKWLR-AAGFPQYAQMYEDHQFPIDL-NNVAK--DHTNLENDQ-----LQSLYRRL 1431
            :        ||::| ..|:.:....||     |:| .|..|  :.|.|...|     ||.:|..|
 Frog   164 SALNYAKRWCKYIREVLGYMEKRLNYE-----IELAKNTVKLSESTRLIFTQQASMPLQGVYLLL 223

  Fly  1432 ---------CVLNRCATMRLDQSHKPQTPQQKEESDDENFALSEHW----------------TFQ 1471
                     ..::....:::.:.::|.: .:|.|.:.......|.|                :.|
 Frog   224 MDHETHTANAAIDMVGQLQMKKYYQPLS-AKKTEIEKWRKEFREQWQREQKRMMDSCAALRKSRQ 287

  Fly  1472 PHIRRWSRIGEMGLELPPPGLLSLNVEKTESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDG 1536
            .:|:|..       :|....|||..:|:             |:..:|.|                
 Frog   288 LYIQRCD-------DLEKAKLLSAKIEE-------------EQIASGHT---------------- 316

  Fly  1537 SSLGEGSDSGRLRRSGSERIKDQAKAL--------------LRRVESIKSRRRKRQNRENVVISG 1587
                 ||.:..:.:....|.:.|:||:              .|..:..|.|.|...:...::|.|
 Frog   317 -----GSANKLVEKRRKSREEAQSKAIEAEASYRSCVQEANARSQQQEKVRERIVSHIRKLIIQG 376

  Fly  1588 PTVL-----DLSQFGQRSSLRKP----DAVYSTPPSPS---------ALSPMHTFPKAPFFGNDL 1634
            ..||     :|.:..|......|    |.:.:..|..|         .|...||.|:.  |..:.
 Frog   377 DQVLKEVTMNLLRMKQSQFEAIPCGYGDLLTTCDPYESGTRYLQFILTLPRKHTDPEK--FTFEE 439

  Fly  1635 KVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLHFFSSPMSQLKEGKSDDSSSYYSDSQESSTGGK 1699
            .:|            :.:|:|:..|......|...||.:|:| ..|::|.....|..:..|.|.|
 Frog   440 YIP------------ACQRSPSVGRRKNAVQLVRVSSSLSEL-YAKTEDGILKISAGERGSWGSK 491

  Fly  1700 LSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKKLTRGGSLNLGKDP 1764
            :    ||         ...:.:|..|:|...:..    .|:..:... :|.|.:..|::: ..|.
 Frog   492 I----PS---------SDSESMGGTSESRSQESP----SDSPGDFVR-RVPKASSTGTMS-SDDL 537

  Fly  1765 KKRDGFRSSSFRSRSTSRKEAKNDEDTAGATTNGGSKRQPVVRW---------HSFQMEERPN-- 1818
            .:||.|.:              .|.|:..||:..|.....:.|.         |.|:....|.  
 Frog   538 DERDSFNA--------------EDVDSTDATSENGLPLHSMDRLGVLSLAAQSHRFKRTRVPTKC 588

  Fly  1819 ------MI--------FRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMERYCP 1869
                  |:        |..|..|.:|.|                  :||       .||  |..|
 Frog   589 RECENFMVSGVECEECFLTCHRKCLENL------------------LIR-------CGH--RKLP 626

  Fly  1870 SHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQTLPLAVRAAFRWLQLNALDQVGIF 1934
            |                |:|      :|||......:...:.:|..:......::..||.|.|::
 Frog   627 S----------------KVP------LFGVDFSQFPRYFPEEVPFIIVRCTAEIEQRALGQQGLY 669

  Fly  1935 RKSGGKSRIMKLREQIEVTDSTAECMDVFDL--QQAYDVADMLKQYFRELPESLLTTKMSETFVA 1997
            |.||.|:|:.||.:..|      ...|:.||  ...:|:...||.:.::||:|::...:.|.|:|
 Frog   670 RISGAKARVEKLLQAFE------NGRDLVDLSGHSPHDITSALKHFLKQLPDSVVPYHLYEQFMA 728

  Fly  1998 IFQHL-----PAEVRLDAV-QCAVLL--LPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCL 2054
            ..:..     ..|...||: |...||  :|..|...|..|...|..|:...:.|:|..||||:..
 Frog   729 FSREFLEDTKENETGNDAIHQMKDLLCSMPHSNYNTLRHLTAHLYRVSERFEDNKMNPNNLGIIF 793

  Fly  2055 AQSIFHSSISTGSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIYTAAKEKLSK 2119
            ..::.. .:.....||:.                |.:.....:.:.|:|.:|::|:  ..:.|..
 Frog   794 GPTLIR-PLPGQDISVNC----------------LIDTGYQSQAVEFLINNYEKIF--GMDDLPS 839

  Fly  2120 CNFSYMEESKPLPLEALGEGMQFHNWRGYLYECTSATIKE--GREKTRGWFSINSLNDSSVDIAY 2182
            ......||      ||...|      .....|...|...|  |.|.:||.|.|..:.::|.|...
 Frog   840 TRPQNSEE------EAADVG------GAEAAEVGGAEAAEVGGAEDSRGSFVIKEVTETSSDGGL 892

  Fly  2183 KKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTN---LLQCQTVKKLDDRTE 2236
            ..:.||..|            |.:|.|....:.|::..|   .|..:.|:....:||
 Frog   893 PGISDGDRL------------PHDVKEDQEAENATYSRNHFSRLPIKLVRMEQTKTE 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 19/84 (23%)
RhoGAP_DLC1 1893..2116 CDD:239840 53/232 (23%)
SRPBCC 2148..2343 CDD:301327 23/94 (24%)
gmipXP_031753686.1 BAR 156..380 CDD:416402 47/270 (17%)
C1_GMIP-like 575..624 CDD:410366 13/75 (17%)
RhoGAP_GMIP 632..827 CDD:239873 51/217 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3060
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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