DRSC/TRiP Functional Genomics Resources

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Protein Alignment cv-c and Arhgap18

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_001164046.1 Gene:Arhgap18 / 293947 RGDID:1305053 Length:665 Species:Rattus norvegicus


Alignment Length:872 Identity:178/872 - (20%)
Similarity:318/872 - (36%) Gaps:281/872 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1439 TMRLDQSHK--PQTPQQKEESDD--ENFALSEHWTFQPHIRRWSRIGEMGLELPPPGLLSLNVEK 1499
            ||..:.|.|  .:.|..:..|.|  :..::..:||...:|:|.:.                |.::
  Rat    45 TMNPESSTKLSERPPFDRSSSQDSLDEVSMEAYWTELENIKRSTE----------------NCQE 93

  Fly  1500 TESSSKESSPDRFEEDGAGITLVTPGCSKAGGIPNDGSSLGEGSDSGRLRRSGSERI-------K 1557
            .:.:.....||..|.:...:        |..|:.|   ..||.:|..:      |.|       :
  Rat    94 GQEAIVVKEPDEGELEEEWL--------KEAGLSN---LFGESADDSQ------ESIVFLSTLTR 141

  Fly  1558 DQAKALLRRVESIKSRRRKRQNRENVVISGPTVLDLSQFGQRSSLRKPDAVYSTPPSPSALSPMH 1622
            .||.|:.:|||::....||:..:.::    |.|.|:  |.|:...::                  
  Rat   142 TQAAAVQKRVETVSQTLRKKSKQYHI----PDVRDI--FAQQREAQE------------------ 182

  Fly  1623 TFPKAPFFGNDLKVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLHFFSSPMSQLKEGKSDDSSSY 1687
                        |.|..||                .||:||:         ....:||.|..||.
  Rat   183 ------------KSPDDSD----------------LRSVRTN---------ENEDQGKDDQPSSG 210

  Fly  1688 YSDSQESSTGGKLSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKKL 1752
            ..|::|...      |.|             :||.|   ||.....::...:...|..|:..:::
  Rat   211 AVDNKEPIP------RVP-------------EDIPA---SETDINLEVSFAEQAVNQKELSKERM 253

  Fly  1753 --TRGGSLNLGKDPKKRDGFRSSSFRSRSTSRKEAKNDEDTAGATTNGGSKRQPVVRWHSFQMEE 1815
              |||...:|            .|||.          .:|..|.|..|               :.
  Rat   254 QKTRGNDASL------------PSFRL----------PKDKTGTTRIG---------------DL 281

  Fly  1816 RPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELP 1880
            .|..:.:.|:                       |.:|...||..:.|              .|| 
  Rat   282 APQDMKKVCY-----------------------LSLIELTALYDVLG--------------VEL- 308

  Fly  1881 KFIKKIKMPDYKDKKVFGVPLLMILQRS-----GQTLPLAVRAAFRWLQLNALDQVGIFRKSGGK 1940
            |..|.:|:.. :|..:||:||.::|::.     |..:||..:.....::..:|:..|:.|..|..
  Rat   309 KQQKAVKIKT-RDSGLFGIPLTILLEQDQRKVPGTRIPLIFQKLISCIEEGSLETEGLLRIPGAA 372

  Fly  1941 SRIMKLREQIEVT--DSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQHLP 2003
            .|:..|.:::|..  :.|.....|    :.:|.|.:||.:.||||:.||:|:..:.|.|: |:||
  Rat   373 MRVKNLCQELEAKFYEGTFNWESV----KQHDAASLLKLFLRELPQPLLSTEYLKAFQAV-QNLP 432

  Fly  2004 A-EVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIF--HSSIST 2065
            . :.:|.|:...|:||||.||:.|..|||||..|..|.::|:||:.|:.:.:|.::|  |:    
  Rat   433 TKKEQLQALNLLVILLPDANRDTLKALLEFLQRVIDNKEKNKMTAVNVAMVMAPNLFMCHA---- 493

  Fly  2066 GSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIYTAAK---EKLSKCNFSYMEE 2127
                         .|....:.:|...|..:...:..:|.:.|.::|..|   .::.|.|.::.::
  Rat   494 -------------LGLKSSEHREFEMAAGTANTMHLLIRYQKLLWTIPKFIVNQVRKHNTAHQKK 545

  Fly  2128 SKPLPLEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSSVDIAYKKVGDGHPLR 2192
            .: ..::.|.:.|.:...:....:..:    .|.:..:|...:.:.:.|.|.:|.:         
  Rat   546 ER-RAMKKLLKKMAYDREKHEKQDRAA----NGADVPQGVIRVQAPHLSKVSMAIQ--------- 596

  Fly  2193 LWRCSTEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKKLDDRTEIYQYALDGQLTTDFCVLRSWQ 2257
                .|| |....:||...:.|.:.      ..||:||    .|::.|.:.|.:........::.
  Rat   597 ----LTE-ELKASDVLARFLSQESG------VAQTLKK----GEVFLYEIGGNIGERCLDDDTYM 646

  Fly  2258 TDL----PRGACVIVETSIDHAKAKPL 2280
            .||    |....||        |:||:
  Rat   647 KDLYHLNPNAEWVI--------KSKPV 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 1/1 (100%)
RhoGAP_DLC1 1893..2116 CDD:239840 65/235 (28%)
SRPBCC 2148..2343 CDD:301327 26/137 (19%)
Arhgap18NP_001164046.1 RhoGAP_ARHGAP18 323..536 CDD:239856 64/234 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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