DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cv-c and Stard8

DIOPT Version :9

Sequence 1:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_006528061.1 Gene:Stard8 / 236920 MGIID:2448556 Length:1099 Species:Mus musculus


Alignment Length:1150 Identity:352/1150 - (30%)
Similarity:548/1150 - (47%) Gaps:253/1150 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1378 EIEAVEACKWLRAAGFPQYAQMYEDHQFPIDLNNVAKDHTNLENDQLQSLYRRLCVLNRCATMRL 1442
            |.||.:||:||||.||.||||::|:..||:|:.:|.||::.|:.|.|.:|.|||..||.||:|:|
Mouse    27 EAEAKKACEWLRATGFSQYAQLFEEGVFPLDIGSVKKDYSFLDQDSLGALCRRLMTLNNCASMKL 91

  Fly  1443 DQSHKPQTPQQKEESDDENFALSEHWTFQPHIRRWSRIGEMGLELPP-PGLL----------SLN 1496
            :...  |..|..:..::|...:|.||.|:...:..|.:|...|..|| |.||          .|:
Mouse    92 EVHF--QCKQDDDSEEEEQCTISSHWAFEQESKCGSLMGSSALLAPPSPSLLGTSSCESVLTELS 154

  Fly  1497 VEKTESSSKESSPDRFEEDGAGITLVTPGCSKAGGI-PNDGSSLGEGSDSGRLRRSGSERIKDQ- 1559
            .....:.|...||:..::...|:   .|..|....: |..|.   |||         .:::|.. 
Mouse   155 AASLPAISASLSPESADQPLLGL---VPSPSNQPFLSPPQGQ---EGS---------QDKVKKHY 204

  Fly  1560 AKALLRRVESIKSRRRKRQNRE----------------------------------NVVISGPTV 1590
            :::.|:.:||:: |:.|..:|:                                  |.|.:...|
Mouse   205 SRSFLKHLESLR-RKEKGDSRQTEPEQCLATSEKATKASSFRTCRGFLSAGFHRAKNRVTTSARV 268

  Fly  1591 LD-----------LSQFGQRSSLRKPDAVYSTPPSPSALSPMH---TFPKA-------PFFGNDL 1634
            .|           ::.|.....:|:.|.:...|..       |   |||::       |..|..|
Mouse   269 RDGETQKAWEAWPVATFRHPQPIRRRDYLVHVPGD-------HKPGTFPRSLSIESLCPDEGRHL 326

  Fly  1635 -------------------KVPSHSDNFLSPNRSSPKRTPTTPRSMRTSP--------------- 1665
                               ...||:..:    .:.|:..|..|.......               
Mouse   327 ADWQSSRCWGYEGRRGSCGSTGSHASTY----DNLPELYPAEPIQAEAEAEAEEGEGSYAHLDDI 387

  Fly  1666 ----------LHFFSSPM-SQLKEGKSDDSSSYYSDSQESSTGGKLSLRKPSKARRFLQRTGKVD 1719
                      :..:|..| ..|:.|..::......:.:|:::..:::.         ::..|:.:
Mouse   388 LEHVWGLQQRVELWSQTMYPDLRPGDKEEEEEEEEEEEEATSSVEVAT---------VEVEGQDE 443

  Fly  1720 DIGAHSDSECHQGRKLLIK----------------------------------DANSNTTEVKVK 1750
            |: |.::|:.|:|....:|                                  :|||....:...
Mouse   444 DL-AQAESQAHRGFPTQVKEEVPLIVLDQAPNVVEPLVQAEAEAPAQAQDLEQEANSTAEPISAS 507

  Fly  1751 KLT--RGGSLNLGKDPKKRDGFRSSSFRSRSTSRKEAKNDEDTAGATTN----------GGSKRQ 1803
            .|:  .|.|::       .....||...|...|..||...:..||...:          |.|..:
Mouse   508 SLSVEEGHSIS-------DTAVSSSELDSSGNSMNEADAADAPAGLQASVPRERRDSGVGASLTR 565

  Fly  1804 PV--VRWHSFQMEERPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIRKLALVTLTGHMER 1866
            |.  :||||||...||::               ::..:......|||:.::.|.:|:.|||.||:
Mouse   566 PCRKLRWHSFQNSHRPSL---------------NSESLEINRQFAGQINLLHKGSLLRLTGFMEK 615

  Fly  1867 YCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQTLPLAVRAAFRWLQLNALDQV 1931
            |...|:..|.|.:|||:|:.|.|||:...|||||.|:.:||:||.||.:::.|.|:|:...||||
Mouse   616 YTVPHKQAWVWSMPKFMKRNKTPDYRGHHVFGVPPLIHVQRTGQPLPQSIQQAMRYLRSQCLDQV 680

  Fly  1932 GIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFV 1996
            |||||||.||||..||:..|.:.... |   ::.|.||||||:||||||:|||.:.|:|::.||:
Mouse   681 GIFRKSGVKSRIQSLRQMNENSPDNV-C---YEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFL 741

  Fly  1997 AIFQHLPAEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIFHS 2061
            .|:|.||.|..|.|.|.|.|||||||||:|..||.||:.: |::::||||:.||.||||.||||.
Mouse   742 QIYQLLPKEQWLAAAQAATLLLPDENREVLQTLLYFLSDI-ASAEENQMTAGNLAVCLAPSIFHL 805

  Fly  2062 SISTGSASVSASPRRKGKGS--GMPDMKELAEAKASHECLSFMIEHYKQIYTAAKEKLSK-C-NF 2122
            ::|...   |:|||.|.|.|  |.|..::|:|..|:.:.||.||...|:::...::.:.: | ::
Mouse   806 NVSKKD---SSSPRIKSKRSLVGRPGPRDLSENMAATQGLSHMISDCKKLFQVPQDMVVQLCGSY 867

  Fly  2123 SYMEESKPLP-------LEALGEGMQFHNWRGYLYECTSATIKEGREKTRGWFSINSLNDSSVDI 2180
            |..|.|.|.|       .:|.|..:..     |:.|.....:::..|:.:||  .|.......::
Mouse   868 SAAELSPPGPALAELRQAQAAGVSLSL-----YMEESVQELLRDAAERFKGW--TNVPGPQHTEL 925

  Fly  2181 AYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKKLDDRTEIYQYALDGQ 2245
            |.:|..||||||:|:.|||:..||..||..|:::||.||.:||:.|.::.|....|:|.|..|..
Mouse   926 ACRKAPDGHPLRMWKASTEVAAPPAVVLHRVLRERALWDEDLLRAQVLEALMPGVELYHYVTDSM 990

  Fly  2246 L---TTDFCVLRSWQTDLPRGACVIVETSIDHAKAKPLFGAVRGVVLASRYLIEPCGSGRSRVMH 2307
            .   ..||.|||.|::|||||.|::|..|:|..:..|..| ||.::|.|:||:||||.||||:.|
Mouse   991 APHPCRDFVVLRMWRSDLPRGGCLLVSQSLDPEQPVPESG-VRALMLTSQYLMEPCGLGRSRLTH 1054

  Fly  2308 LARVDVKGKTPEWYNKNYGHICSHYLSRIRLAFKHV-ADGPESKV 2351
            :.|.|::|::|:||||.:||:|:..:::||.:|..: |.|||:|:
Mouse  1055 ICRADLRGRSPDWYNKVFGHLCAMEVAKIRDSFPTLQAAGPETKL 1099

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937 30/58 (52%)
RhoGAP_DLC1 1893..2116 CDD:239840 110/224 (49%)
SRPBCC 2148..2343 CDD:301327 81/197 (41%)
Stard8XP_006528061.1 SAM_DLC1,2-like 31..90 CDD:188937 30/58 (52%)
RhoGAP 645..859 CDD:383032 110/221 (50%)
SRPBCC 886..1090 CDD:387369 83/211 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3058
eggNOG 1 0.900 - - E1_KOG2200
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001209
OrthoInspector 1 1.000 - - otm42668
orthoMCL 1 0.900 - - OOG6_103453
Panther 1 1.100 - - O PTHR12659
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X752
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.810

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