DRSC/TRiP Functional Genomics Resources

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Protein Alignment NK7.1 and msx2

DIOPT Version :10

Sequence 1:NP_650357.2 Gene:NK7.1 / 41747 FlyBaseID:FBgn0024321 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_002936749.1 Gene:msx2 / 394987 XenbaseID:XB-GENE-852974 Length:256 Species:Xenopus tropicalis


Alignment Length:247 Identity:71/247 - (28%)
Similarity:99/247 - (40%) Gaps:70/247 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 PAAKKKKLSSTV--ALPPDISPTG-----------SSDSLMRDK--------LMANNSSSPGSNV 364
            |...|:.|||..  .:.|.:||:.           |.::||.||        |...::|:.||..
 Frog     4 PRKIKEDLSSDEEGQVHPTLSPSDDHKIKVSSLPFSVEALMADKRVPKEAPHLRGVDASAAGSTP 68

  Fly   365 --------NAQMQSNANSTLETT---EDDSDSGSTDAR-------------------RK----KK 395
                    ::........|.||:   .::|:.|:|.::                   ||    :|
 Frog    69 RHLHMGIRDSPSPPGLTKTFETSSVKSENSEDGTTWSKDGGSYSPPPRHLSPSTCTLRKHKTNRK 133

  Fly   396 ARTTFTGRQIFELEKMFENKKYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQDNVTNNEAA 460
            .||.||..|:..||:.|..|:|||.:||.|.:..|.:|||||||||||||.|.|:    ......
 Frog   134 PRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKR----LQEAEI 194

  Fly   461 EHKSSNAKP-GATGTATTTPSGEPTDKRSSNATS----------PTVGNAAT 501
            |.....||| ...|.:...|...|....|...:|          |.||..||
 Frog   195 EKLKMAAKPILPPGFSIPFPINSPIQAASLYGSSYQFHRPVLPIPPVGLYAT 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NK7.1NP_650357.2 Homeodomain 394..450 CDD:459649 31/55 (56%)
msx2XP_002936749.1 Homeodomain 132..188 CDD:459649 31/55 (56%)

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