DRSC/TRiP Functional Genomics Resources

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Protein Alignment NK7.1 and Hoxb3

DIOPT Version :10

Sequence 1:NP_650357.2 Gene:NK7.1 / 41747 FlyBaseID:FBgn0024321 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_001100512.1 Gene:Hoxb3 / 303488 RGDID:1310780 Length:429 Species:Rattus norvegicus


Alignment Length:290 Identity:75/290 - (25%)
Similarity:109/290 - (37%) Gaps:92/290 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 PMP----ATKQSQILGKSATKKESSGK--PAAKKKKLSSTV---------------ALPPDISPT 341
            |.|    ||.......:||...:|.|.  |.||.|:|:.:.               :.||..:||
  Rat    33 PQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPT 97

  Fly   342 GSSDSLMRDKLMANNSSSPGSNVNAQMQSNANSTLE----------------------TTE---- 380
            .::.:       :||...|..:...:..:::||||.                      |.|    
  Rat    98 STTSN-------SNNGGGPSKSGPPKCGASSNSTLTKQIFPWMKESRQTSKLKNSSPGTAEGCGG 155

  Fly   381 ----------------------DDSDSGSTDARRKKKARTTFTGRQIFELEKMFENKKYLSASER 423
                                  |.|..||.   ..|:|||.:|..|:.||||.|...:||....|
  Rat   156 GGGGGGGGGSSSGGGGSGGGGGDKSPPGSA---ASKRARTAYTSAQLVELEKEFHFNRYLCRPRR 217

  Fly   424 TEMAKLLMVTETQVKIWFQNRRTKWKKQDNVTNNEAAEHKSSNAKPGATGTATTTPSGEPTDKRS 488
            .|||.||.::|.|:||||||||.|:|             |...||..|:.:...:|:|.|.....
  Rat   218 VEMANLLNLSERQIKIWFQNRRMKYK-------------KDQKAKGLASSSGGPSPAGSPPQPMQ 269

  Fly   489 SNATSPTVGNAATIAEIKKSPKSPNRGSNN 518
            |.|......::.|.:....||.:.::|..|
  Rat   270 STAGFMNALHSMTPSYDSPSPPAFSKGHQN 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NK7.1NP_650357.2 Homeodomain 394..450 CDD:459649 30/55 (55%)
Hoxb3NP_001100512.1 Homeodomain 188..244 CDD:459649 31/68 (46%)
DUF4074 365..427 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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