DRSC/TRiP Functional Genomics Resources

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Protein Alignment NK7.1 and hoxc12

DIOPT Version :10

Sequence 1:NP_650357.2 Gene:NK7.1 / 41747 FlyBaseID:FBgn0024321 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_002936693.1 Gene:hoxc12 / 100487557 XenbaseID:XB-GENE-853677 Length:263 Species:Xenopus tropicalis


Alignment Length:172 Identity:45/172 - (26%)
Similarity:77/172 - (44%) Gaps:28/172 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 RDSNNSPMPATKQSQILGKSATKKESSGKPAAKKKKLSSTVALPPDISPTGSSDSLMRDKLMANN 356
            |:..|...|:.|:..:|....:...|:.....:|...::..::|.|   ..|..||         
 Frog    96 REGCNPDTPSLKRENVLLPLESGIHSAMNSTFQKYDYTAVDSVPHD---PPSCQSL--------- 148

  Fly   357 SSSPGSNVNAQMQSNANSTLETTEDDSDSGS-------------TDARRKKKARTTFTGRQIFEL 408
            .|..||::..:...||.|...|....|:.|:             |.:|:|:|   .::..|:.||
 Frog   149 ESDSGSSLLNEGTKNAVSEAATMASPSNPGNSLPASGAPWYPIHTRSRKKRK---PYSKIQLAEL 210

  Fly   409 EKMFENKKYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKK 450
            |..|...::::...|.|::..|.:::.||||||||||.|.|:
 Frog   211 EGEFMVNEFITRQRRRELSDRLSLSDQQVKIWFQNRRMKKKR 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NK7.1NP_650357.2 Homeodomain 394..450 CDD:459649 20/55 (36%)
hoxc12XP_002936693.1 Homeodomain 196..252 CDD:459649 22/58 (38%)

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