DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and RAD51

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_011021.3 Gene:RAD51 / 856831 SGDID:S000000897 Length:400 Species:Saccharomyces cerevisiae


Alignment Length:328 Identity:93/328 - (28%)
Similarity:142/328 - (43%) Gaps:45/328 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PEEVLTTPKVRFLDT---RQQSLHT---IVRKCTPD--DVRVLKDAAA-KWLAEMPQSADSLFKP 79
            |.|.|....:...|.   |:..|||   :......|  :::.:.:|.| |.|.|..:.....|..
Yeast    82 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVT 146

  Fly    80 LVNVRWSR-----VSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGL 139
            ..:....|     ::.|...||...||||.|..||||.|....||:||...|::..|:|.::|| 
Yeast   147 AADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG- 210

  Fly   140 GKG-VAYICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQ 203
            |:| ..||.||.:|...||:.:::.. ...|:..||   |:.......|:..|. :::...::|.
Yeast   211 GEGKCLYIDTEGTFRPVRLVSIAQRF-GLDPDDALN---NVAYARAYNADHQLR-LLDAAAQMMS 270

  Fly   204 QHGIGLIIIDSVAAIFRLYNDYLERAR------HMRRLADALLSYADKYNCAVVCVNQVATR-DG 261
            :....||::|||.|::|  .|:..|..      |:.:...||...||::..|||..|||..: ||
Yeast   271 ESRFSLIVVDSVMALYR--TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG 333

  Fly   262 ------QDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPNDFAEFLITA 320
                  ..:.|..|...||...|||...:     ..|.|    |..:::.||..|.....|.|..
Yeast   334 GMAFNPDPKKPIGGNIMAHSSTTRLGFKK-----GKGCQ----RLCKVVDSPCLPEAECVFAIYE 389

  Fly   321 EGV 323
            :||
Yeast   390 DGV 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 76/254 (30%)
Rad51_DMC1_radA 88..324 CDD:238543 77/250 (31%)
RAD51NP_011021.3 recomb_RAD51 83..397 CDD:274048 92/327 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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