DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and RAD57

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_010287.1 Gene:RAD57 / 851567 SGDID:S000002411 Length:460 Species:Saccharomyces cerevisiae


Alignment Length:249 Identity:75/249 - (30%)
Similarity:111/249 - (44%) Gaps:60/249 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPARRL- 157
            |:|...|||:.|.||||:.|.:..||:|||:||:|.|||....||||....||.||...|.:|| 
Yeast   106 AMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPTQRLE 170

  Fly   158 --LQMSKACEKRHPEMELNFLG----NIFVENHIEAEPLLAC--------VIN-RIPRLMQQH-- 205
              |....|.||         ||    |||.         ::|        :|| ::|.|:::.  
Yeast   171 SMLSSRPAYEK---------LGITQSNIFT---------VSCNDLINQEHIINVQLPILLERSKG 217

  Fly   206 GIGLIIIDSVAAIFRL------YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDGQDE 264
            .|.|:||||::...|:      :.:..|...::.|:|:.|...|..|:.:||..|||..:     
Yeast   218 SIKLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDK----- 277

  Fly   265 IPCLGLQWAHLGRTRLRVSRVPKQHRMG------DQLITVRKLEILYSPETPND 312
             |......||      |.......:::|      :..|..|::..|....:.||
Yeast   278 -PLANSPVAH------RTYVTDYDYQLGWLVGWKNSTILYRQMNSLLGASSNND 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 75/249 (30%)
Rad51_DMC1_radA 88..324 CDD:238543 75/249 (30%)
RAD57NP_010287.1 XRCC3 107..445 CDD:410899 74/248 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346035
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3725
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto99875
orthoMCL 1 0.900 - - OOG6_104619
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.620

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