Protein Alignment spn-B and RAD51D

DIOPT Version :10

• Sequence 1: NP_476740.1
• Gene: spn-B / 41746
• FlyBaseID: FBgn0003480
• Length: 341
• Species: Drosophila melanogaster
• Sequence 2: NP_172254.2
• Gene: RAD51D / 837289
• AraportID: AT1G07745
• Length: 322
• Species: Arabidopsis thaliana
• Alignment Length: 272
• Identity: 61/272 - (22%)
• Similarity: 106/272 - (38%)
• Gaps: 47/272 - (17%)

  Fly    43 LHTIVRKCTP--DDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTGGGVVT 105
            |..|.|:|.|  :.:::|:|        :.::..:|            |.|....|....||...
plant    62 LSLIERQCRPLVNGLKLLED--------LHRNKHTL------------STGDKETDSLLQGGFRE 106

  Fly   106 RGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPARRLLQMSKACEKRHPE 170
            ..:|||.|.:..||||..:|.:..| ....||    .|.|:.|.:||.|||:.|.  .|......
plant   107 GQLTELVGPSSSGKTQFCMQAAASV-AENHLG----RVLYLDTGNSFSARRIAQF--ICSSSDAT 164

  Fly   171 MELNFLGNIFVENHIEAEPLLAC-----VINRIPRLMQQHGIGLIIIDSVAAIFRLYNDYLERAR 230
            :....:..|......:...|...     :..|:...:.:..:.|:::||:::   |....|..:.
plant   165 LGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISS---LITPILGGSG 226

  Fly   231 HMRRLADALLSY-----ADKYNCAVVCVNQV--ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQ 288
            ...|.....:.|     |.:::.|::..|..  |..:|....|.||..|..:...||.:||   .
plant   227 SQGRALMVAIGYLLKKLAHEHSIAILVTNHTVGAGGEGGKTKPALGETWKSIPHVRLSLSR---D 288

  Fly   289 HRMGDQLITVRK 300
            |:..:..|::.|
plant   289 HKNSNCTISILK 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
spn-B	NP_476740.1	XRCC3	95..311	CDD:410899	51/218 (23%)
RAD51D	NP_172254.2	RecA	45..>131	CDD:440236	22/88 (25%)
		Rad51D	101..301	CDD:410897	50/213 (23%)