DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and XRCC3

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001093588.1 Gene:XRCC3 / 7517 HGNCID:12830 Length:346 Species:Homo sapiens


Alignment Length:362 Identity:110/362 - (30%)
Similarity:166/362 - (45%) Gaps:61/362 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NFLDQLPK--------HIREIAEQVNVLAPE----EVLTTPKVRFLDTRQQSLHTIVRKCTPDDV 55
            :.||..|:        .::.:.|.::...|:    ..|::|:|..| .|..|||           
Human     4 DLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHL-LRTASLH----------- 56

  Fly    56 RVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKT 120
              |:.::.....::.|.     |.....:..|:|.||..||....||:...|||||.|.:..|||
Human    57 --LRGSSILTALQLHQQ-----KERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKT 114

  Fly   121 QLLLQLSLCVQLPRELGGLGKGVAYICTESSFPARRLLQMSKACEKRHPEM------ELNFLGNI 179
            ||.|||.|.||.||:.|||..|..|||||.:||.:||.|:.....:...::      :|.|...|
Human   115 QLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQI 179

  Fly   180 FVENHIEAEPLLACVINRIPRLMQQHGIGLIIIDSVAAIFRLYND---YLERARHMRRLADALLS 241
            |:|:..:.:.||.||..::|.|:.:....|::||||||.||...|   ...||||::.|...|..
Human   180 FIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRE 244

  Fly   242 YADKYNCAVVCVNQVATRDGQDE---------------IPCLGLQWAHLGRTRLRVSRVPKQH-R 290
            .:..:...|:|:|||.  :..:|               .|.||:.||:....||...|:.::. .
Human   245 LSSAFQSPVLCINQVT--EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307

  Fly   291 MGDQLITVRKLEILYSPETPNDFAEFLITAEGVVNVP 327
            :|   ...|.|.:|.:|..|.....:.|:||||...|
Human   308 LG---CPARTLRVLSAPHLPPSSCSYTISAEGVRGTP 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 91/260 (35%)
Rad51_DMC1_radA 88..324 CDD:238543 91/260 (35%)
XRCC3NP_001093588.1 Rad51_DMC1_radA 82..338 CDD:238543 91/260 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158704
Domainoid 1 1.000 141 1.000 Domainoid score I4743
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36178
Inparanoid 1 1.050 142 1.000 Inparanoid score I4469
Isobase 1 0.950 - 0 Normalized mean entropy S3725
OMA 1 1.010 - - QHG58343
OrthoDB 1 1.010 - - D1341207at2759
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto90566
orthoMCL 1 0.900 - - OOG6_104619
Panther 1 1.100 - - LDO PTHR46487
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 1 1.000 - - X5264
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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