DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and rad51

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001016393.1 Gene:rad51 / 549147 XenbaseID:XB-GENE-1016881 Length:336 Species:Xenopus tropicalis


Alignment Length:295 Identity:89/295 - (30%)
Similarity:129/295 - (43%) Gaps:47/295 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DVRVLKDA-AAKWLAEMPQSADSLFKPLVNVRWSR-----VSFGCSALDRCTGGGVVTRGITELC 112
            :::.:.:| |.|.|||..:.....|.........|     :|.|...||:...||:.|..|||:.
 Frog    59 NIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQISTGSKELDKLLQGGIETGSITEMF 123

  Fly   113 GAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA-YICTESSFPARRLLQMSKACEKRHPEMELNFL 176
            |....|||||...|::..|||.:.|| |:|.| ||.||.:|...|||    |..:|:.....:.|
 Frog   124 GEFRTGKTQLCHTLAVTCQLPIDRGG-GEGKAMYIDTEGTFRPERLL----AVAERYGLSGSDVL 183

  Fly   177 GNI-----FVENHIEAEPLLACVINRIPRLMQQHGIGLIIIDSVAAIFRLYNDYLERAR------ 230
            .|:     |..:|      ...::.:...:|.:....|:|:||..|::|  .||..|..      
 Frog   184 DNVAYARAFNTDH------QTQLLYQASAMMAESRYALLIVDSATALYR--TDYSGRGELSARQM 240

  Fly   231 HMRRLADALLSYADKYNCAVVCVNQVATR-DG------QDEIPCLGLQWAHLGRTRLRVSRVPKQ 288
            |:.|....||..||::..|||..|||..: ||      ..:.|..|...||...|||.:.:...:
 Frog   241 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGE 305

  Fly   289 HRMGDQLITVRKLEILYSPETPNDFAEFLITAEGV 323
            .|:         .:|..||..|...|.|.|.|:||
 Frog   306 TRI---------CKIYDSPCLPEAEAMFAINADGV 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 80/259 (31%)
Rad51_DMC1_radA 88..324 CDD:238543 81/255 (32%)
rad51NP_001016393.1 recomb_RAD51 22..336 CDD:274048 89/295 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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