DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and xrcc3

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001016141.1 Gene:xrcc3 / 548895 XenbaseID:XB-GENE-1016741 Length:348 Species:Xenopus tropicalis


Alignment Length:356 Identity:111/356 - (31%)
Similarity:179/356 - (50%) Gaps:58/356 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DQLPKHIREIA--EQVNVLAPEEVLT--TPKVRFL------DTR--QQSLHTIVRKCTPDDVRVL 58
            |||....|.||  ::.|:.:...:||  .|:::.|      |..  |:::..::||..  .|..|
 Frog     4 DQLEVSPRIIAAVKKANIKSAGNILTLSVPELQKLANLSVADVHHLQRAVSAVLRKNL--GVTAL 66

  Fly    59 KDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLL 123
            :..:.|  |:.|            .:..::|.||..||....|||...||||:.|.:..||||:.
 Frog    67 QIYSEK--AKFP------------AQHQKLSLGCKVLDNFLRGGVPLVGITEIAGESSAGKTQIG 117

  Fly   124 LQLSLCVQLPRELGGLGKGVAYICTESSFPARRLLQMSKACEKRHPEM------ELNFLGNIFVE 182
            |||.|.||.|.|.|||..|..|||||.:||::||.|:.|:..|...::      .:.|..:||||
 Frog   118 LQLCLSVQYPVEYGGLASGAVYICTEDAFPSKRLQQLIKSQHKLRSDVPTEVIKNIRFGDSIFVE 182

  Fly   183 NHIEAEPLLACVINRIPRLMQQHGIGLIIIDSVAAIFR---LYNDYLERARHMRRLADALLSYAD 244
            :..:.:.|..|:..::|.|:.:..|.|:||||:||:||   ...|...:|:|::.|...|.|.::
 Frog   183 HTADVDTLTECITKKVPVLLLRGSIRLVIIDSIAALFRCEFAAKDAAIKAKHLQTLGAKLHSMSN 247

  Fly   245 KYNCAVVCVNQVATR-----------DGQDE--IPCLGLQWAHLGRTRLRVSR----VPKQHRMG 292
            ::...|:|:|||..|           ..||:  :|.||:.|::....|:.|:|    .|.:|..|
 Frog   248 RFLTPVLCINQVTDRVREMNSEQIDLGLQDKKVVPALGISWSNQLLMRVMVARTQHMAPAEHAGG 312

  Fly   293 DQLITVRKLEILYSPETPNDFAEFLITAEGV 323
                .:|.:|::::|..|.....:.:..|||
 Frog   313 ----ILRTMEVVFAPHIPQSSCYYTVDLEGV 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 89/261 (34%)
Rad51_DMC1_radA 88..324 CDD:238543 91/262 (35%)
xrcc3NP_001016141.1 RNA_pol_A_CTD <4..64 CDD:332122 15/61 (25%)
Rad51_DMC1_radA 82..340 CDD:238543 91/262 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 154 1.000 Domainoid score I4228
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36178
Inparanoid 1 1.050 154 1.000 Inparanoid score I4220
OMA 1 1.010 - - QHG58343
OrthoDB 1 1.010 - - D1341207at2759
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto104367
Panther 1 1.100 - - LDO PTHR46487
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 1 1.000 - - X5264
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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