DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and rad51c

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001016923.1 Gene:rad51c / 548416 XenbaseID:XB-GENE-1015191 Length:361 Species:Xenopus tropicalis


Alignment Length:360 Identity:105/360 - (29%)
Similarity:159/360 - (44%) Gaps:70/360 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EIAEQVNVLAPEEVLTTPKVRFLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFK 78
            |::::..: :.||.|...::...:.:..|...|::|.|..|           |....||...:  
 Frog    36 ELSKEAGI-SNEEALEVLQIVKGEAQSSSSCQIIQKHTAFD-----------LLGQEQSQGFV-- 86

  Fly    79 PLVNVRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGV 143
                     ::| |||||...|||:....|||:||..|||||||.:||::.||:|...||:....
 Frog    87 ---------ITF-CSALDEILGGGIPVAKITEICGVPGVGKTQLCMQLAVDVQIPECFGGVAGET 141

  Fly   144 AYICTESSFPARRLLQMSKAC------------EKRHPEMELNF-----LGNIF---VENHIEAE 188
            .:|.||.||...||:.::.||            :|.|.:....|     |..|:   ..::||  
 Frog   142 VFIDTECSFRLERLMDIANACVQHCNLIAQGHQDKDHIKAMQTFTLNEILSQIYYFSCHDYIE-- 204

  Fly   189 PLLACVINRIPRLMQQH-GIGLIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVV 251
              |...||.:|..:..| .:.|::|||:|..|| .:.|...|.|.:......|:|.|...|.|||
 Frog   205 --LLAQINLLPDFLSSHPKVKLVVIDSIAFPFRHSFEDLSLRTRLLNGFGQQLISLAHNCNLAVV 267

  Fly   252 CVNQVATRDGQDE---IPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPNDF 313
            ..||:.|:.|..:   :|.||..|.|....||.:....||     :.:|:.|     ||......
 Frog   268 LTNQMTTKIGPSDSKLVPALGESWGHASTIRLILHWKSKQ-----RFVTLCK-----SPSQKKAT 322

  Fly   314 AEFLITAEGV--VNVPEPS----VP-SPPAKMRRL 341
            ..:.||::|.  ..:.||.    :| |.|.|..|:
 Frog   323 VPYGITSQGFRDAEIAEPEANALIPASNPRKRPRV 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 85/260 (33%)
Rad51_DMC1_radA 88..324 CDD:238543 86/262 (33%)
rad51cNP_001016923.1 Rad51_DMC1_radA 86..333 CDD:238543 86/272 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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