DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and xrcc3

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001013559.1 Gene:xrcc3 / 541414 ZFINID:ZDB-GENE-050320-116 Length:352 Species:Danio rerio


Alignment Length:343 Identity:111/343 - (32%)
Similarity:168/343 - (48%) Gaps:33/343 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EQVNVLAPEEVLTTPKVRFLDTRQ------QSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADS 75
            ||:. |.|..:....|..|...::      ..|..:.|....|..|:.:..||......|.:|..
Zfish     4 EQLE-LNPRIIAAVKKGNFRSAKEVLCVSGPDLQRLTRLSKADVQRLHQAVAASVRKSKPVTALQ 67

  Fly    76 LFK---PLVNVRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELG 137
            |.:   |::. ...|:||.|..||....||:..||||||.|.:..||||..|||.|.||.|:|.|
Zfish    68 LIQGECPVLE-PGHRLSFACPVLDGLMRGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHG 131

  Fly   138 GLGKGVAYICTESSFPARRLLQMSKACEKRHPEM------ELNFLGNIFVENHIEAEPLLACVIN 196
            ||..|..|||||.|||.:||.|:.....:..|::      .|.|..||::|:..:.|.|..||..
Zfish   132 GLNSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVCVSQ 196

  Fly   197 RIPRLMQQHGIGLIIIDSVAAIFR---LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVA- 257
            |:|.|:::..:.|:::|||||:||   ..::.::|:||:...:..|...:..|...|:|||||. 
Zfish   197 RVPVLLKRGLVRLLVVDSVAALFRSEFQADEAVQRSRHLLAFSSTLHRLSHTYAAPVLCVNQVTD 261

  Fly   258 TRDGQDE------------IPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETP 310
            ..||.:.            :|.||:.||:....||.:.|:..|.:...:....||||::::|..|
Zfish   262 VVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSDSRSCAPRKLEVVFAPHLP 326

  Fly   311 NDFAEFLITAEGVVNVPE 328
            .......:..|||..:|:
Zfish   327 RSSCLCGVWEEGVRGIPD 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 92/257 (36%)
Rad51_DMC1_radA 88..324 CDD:238543 92/257 (36%)
xrcc3NP_001013559.1 Rad51 81..339 CDD:285604 92/257 (36%)
Rad51_DMC1_radA 82..340 CDD:238543 92/257 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594663
Domainoid 1 1.000 156 1.000 Domainoid score I4162
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36178
Inparanoid 1 1.050 158 1.000 Inparanoid score I4243
OMA 1 1.010 - - QHG58343
OrthoDB 1 1.010 - - D1341207at2759
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto38988
orthoMCL 1 0.900 - - OOG6_104619
Panther 1 1.100 - - LDO PTHR46487
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 1 1.000 - - X5264
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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