DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and Rad51

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001102674.1 Gene:Rad51 / 499870 RGDID:1563603 Length:339 Species:Rattus norvegicus


Alignment Length:295 Identity:87/295 - (29%)
Similarity:129/295 - (43%) Gaps:47/295 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DVRVLKDAAA-KWLAEMPQSADSLFKPLVNVRWSR-----VSFGCSALDRCTGGGVVTRGITELC 112
            :::.:.:|.| |.|||..:.....|.........|     ::.|...||:...||:.|..|||:.
  Rat    62 NIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMF 126

  Fly   113 GAAGVGKTQLLLQLSLCVQLPRELGGLGKGVA-YICTESSFPARRLLQMSKACEKRHPEMELNFL 176
            |....||||:...|::..|||.:.|| |:|.| ||.||.:|...|||    |..:|:.....:.|
  Rat   127 GEFRTGKTQICHTLAVTCQLPIDRGG-GEGKAMYIDTEGTFRPERLL----AVAERYGLSGSDVL 186

  Fly   177 GNI-----FVENHIEAEPLLACVINRIPRLMQQHGIGLIIIDSVAAIFRLYNDYLERAR------ 230
            .|:     |..:|      ...::.:...:|.:....|:|:||..|::|  .||..|..      
  Rat   187 DNVAYARGFNTDH------QTQLLYQASAMMVESRYALLIVDSATALYR--TDYSGRGELSARQM 243

  Fly   231 HMRRLADALLSYADKYNCAVVCVNQVATR-DG------QDEIPCLGLQWAHLGRTRLRVSRVPKQ 288
            |:.|....||..||::..|||..|||..: ||      ..:.|..|...||...|||.:.:...:
  Rat   244 HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGE 308

  Fly   289 HRMGDQLITVRKLEILYSPETPNDFAEFLITAEGV 323
            .|:         .:|..||..|...|.|.|.|:||
  Rat   309 TRI---------CKIYDSPCLPEAEAMFAINADGV 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 78/259 (30%)
Rad51_DMC1_radA 88..324 CDD:238543 79/255 (31%)
Rad51NP_001102674.1 recomb_RAD51 25..339 CDD:274048 87/295 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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