DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spn-B and rad51d

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001005687.1 Gene:rad51d / 448189 XenbaseID:XB-GENE-1014974 Length:320 Species:Xenopus tropicalis


Alignment Length:305 Identity:80/305 - (26%)
Similarity:131/305 - (42%) Gaps:32/305 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VNVLAPEEVLTTPKVRFLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAE---MPQSADSLFKPL 80
            |.||....|.|.     :|.....|..:.|||:. ..:.|.......||:   .|.|...:::.|
 Frog    17 VAVLKANNVKTV-----IDLVASDLEELARKCSL-SYKTLMAVRRVLLAQYSAFPSSGADVYEEL 75

  Fly    81 VNVRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
            .: ..:.:..|...||.....|:.|..:||:.||||.||||....:::.|..     .|.:.|.|
 Frog    76 KS-STAILPTGNRKLDILLDSGLYTGEVTEIAGAAGSGKTQTCQSIAVNVAY-----NLKQTVLY 134

  Fly   146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQ-----H 205
            :.|.....|.||||:.::..|...| ::..|..|.|....:...|.....:...::.||     .
 Frog   135 VDTTGGLTASRLLQLVQSRTKSEDE-QVASLQRIEVIRVFDIYKLFDAFQDLRHQISQQLLRSGE 198

  Fly   206 GIGLIIIDSVAAIF--RLYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRDG-QDEIPC 267
            .:.|:|:|||.|:.  .|...:.|....|.:||..|.:.|..|:.|::..|.: |:|| ....|.
 Frog   199 PLRLVIVDSVCAVIYPMLGGKHTEGMAIMMQLARELQTLAHDYHLAILISNSI-TKDGATGNRPA 262

  Fly   268 LGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPND 312
            ||..|:.:..||:.::  |.:...|..::::.|     ||..|.:
 Frog   263 LGRSWSFVPSTRILLT--PTELNCGHSIVSLVK-----SPRQPTN 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 64/234 (27%)
Rad51_DMC1_radA 88..324 CDD:238543 64/233 (27%)
rad51dNP_001005687.1 P-loop_NTPase 82..298 CDD:393306 63/229 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.