DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and spn-D

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_733200.1 Gene:spn-D / 318579 FlyBaseID:FBgn0003482 Length:270 Species:Drosophila melanogaster


Alignment Length:263 Identity:70/263 - (26%)
Similarity:118/263 - (44%) Gaps:16/263 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 VRVLKDAAAKWLAEMPQSADSLFKPLVNVRW-------SRVSFGCSALDRCTGGGVVTRGITELC 112
            |||.:.:..:.:...|..:...|:......|       :::..|..|||...|||:....:.||.
  Fly     6 VRVWEPSQPEAIERRPSVSHENFRIFDKSCWDISQSASNKILTGKKALDTHFGGGISLGHLVELI 70

  Fly   113 GAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPARRLLQMSKACEKRH----PEMEL 173
            |.:|.||||:.|||.|.||:|:..|||.....:|.|...|...||:.::...|:::    ||.:.
  Fly    71 GNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKA 135

  Fly   174 N-FLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLIIIDSVAAIFRLYNDYLERARHMRRLAD 237
            : .|..|......:.:.|:|.|::....|:....|.||:|||:|...|:..|...|...:..|.:
  Fly   136 HKMLQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHE 200

  Fly   238 ALLSYADKYNCAVVCVNQVATRDGQDEI---PCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVR 299
            ::.....::....|..|.:..|..:.:.   |.||...:||...|:..|...:.| :|....|.|
  Fly   201 SMRRLQRQHELTWVFTNVLTHRYVKQKFQVEPALGDLHSHLINERIWFSGSSELH-LGKSWRTSR 264

  Fly   300 KLE 302
            .::
  Fly   265 LIK 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 64/224 (29%)
Rad51_DMC1_radA 88..324 CDD:238543 64/223 (29%)
spn-DNP_733200.1 P-loop_NTPase 46..249 CDD:304359 59/202 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445394
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 00.000 Not matched by this tool.
43.770

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