DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and rhp57

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_593627.1 Gene:rhp57 / 2542007 PomBaseID:SPAC20H4.07 Length:354 Species:Schizosaccharomyces pombe


Alignment Length:312 Identity:84/312 - (26%)
Similarity:139/312 - (44%) Gaps:62/312 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 AEMPQSADSLFKPLVNVRWSR-------VSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLL 124
            :|:.|..:.:...|..||.|.       ::.|...||....||:....:||:||.:|.||:|..:
pombe    47 SELLQLIEQISLLLQPVRCSASKVTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCM 111

  Fly   125 QLSLCVQLPRELGGLGKGVAYICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEP 189
            ||.|.||||..|||:.|...:|.|||....:||.::::...:|:|:.:..   :|.::|..:...
pombe   112 QLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARYLPERYPKADKK---DIIIKNPGDRVY 173

  Fly   190 LLAC---------VINRIPRLMQQHGIGLIIIDSVAAIFRL---YN----------DYLERARHM 232
            .:.|         :..::|.|..:..|||:|:||||:.:|.   ||          :..:|...:
pombe   174 TILCPDLESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQL 238

  Fly   233 RRLADALLSYADKYNCAVVCVNQVATR--------------------------DGQDEIPCLGLQ 271
            .:||..|.:.|.::..|||..|||:.|                          |...:||.|||.
pombe   239 GKLAMTLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLV 303

  Fly   272 WAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPNDFAEFLITAEGV 323
            |.:...|||.:  :.|.....:.  :.|...::|||.:|.......|.:.|:
pombe   304 WTNNISTRLAL--IKKTDSATNN--SGRIFRVVYSPNSPRLDVRICIGSVGI 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 77/290 (27%)
Rad51_DMC1_radA 88..324 CDD:238543 78/284 (27%)
rhp57NP_593627.1 RecA 32..354 CDD:223544 84/312 (27%)
Rad51_DMC1_radA 75..352 CDD:238543 78/284 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 98 1.000 Domainoid score I1878
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H36178
Inparanoid 1 1.050 98 1.000 Inparanoid score I1682
OMA 1 1.010 - - QHG58343
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto101565
orthoMCL 1 0.900 - - OOG6_104619
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.760

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