DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and Rad51b

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_030102481.1 Gene:Rad51b / 19363 MGIID:1099436 Length:381 Species:Mus musculus


Alignment Length:369 Identity:92/369 - (24%)
Similarity:151/369 - (40%) Gaps:94/369 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LAPEEVLTTPKVRFLDTR--QQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVR 84
            |:|.|::   ||..|..|  .:.|||:.:.|.|               :|..:.:...:...::.
Mouse    44 LSPLELM---KVTGLSYRGVHELLHTVSKACAP---------------QMQTAYELKTRRSAHLS 90

  Fly    85 WSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTE 149
            .:.:|....|||....|||....:||:.|..|.||||..:.:|:...||..||||...|.||.||
Mouse    91 PAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTE 155

  Fly   150 SSFPARRLLQMSKACEKRHPEMELNFLGNIFVEN---HIEAEPLLAC--VINRIPRLMQQ---HG 206
            |:|.|.||::::   |.|.|:. .|....:.:.:   |:..|  |.|  ::.|:..|.::   .|
Mouse   156 SAFTAERLVEIA---ESRFPQY-FNTEEKLLLTSSRVHLCRE--LTCEGLLQRLESLEEEIISKG 214

  Fly   207 IGLIIIDSVAAIFR------LYNDYLERARHMRRLADALLSYADKYNC---------------AV 250
            :.|:|:||:|::.|      |..:..||.:.:.:.|..|...|.:::.               .|
Mouse   215 VKLVIVDSIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPGERKMPATSASSGGKV 279

  Fly   251 VCVNQVATR---------------------DGQDEIPC----LGLQWAHLGRTRLRVSRVPKQHR 290
            :..||:.|.                     :|.....|    ||..|.|...|||.:..:..:.|
Mouse   280 ILTNQITTHLSGALPSQADLVSPADDLSLSEGTSGSSCLVAALGNTWGHCVNTRLILQYLDSERR 344

  Fly   291 MGDQLITVRKLEILYSPETPNDFAEFLITAEG---VVNVPEPSV 331
                       :||.:......|..|:.|.:|   |:.|..||:
Mouse   345 -----------QILIAKSPLAAFTSFVYTIKGEGLVLQVFSPSL 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 75/292 (26%)
Rad51_DMC1_radA 88..324 CDD:238543 75/292 (26%)
Rad51bXP_030102481.1 Rad51_DMC1_radA 94..369 CDD:238543 75/291 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1065
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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