DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-B and Xrcc3

DIOPT Version :9

Sequence 1:NP_476740.1 Gene:spn-B / 41746 FlyBaseID:FBgn0003480 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_006240711.1 Gene:Xrcc3 / 102551085 RGDID:1306849 Length:345 Species:Rattus norvegicus


Alignment Length:324 Identity:104/324 - (32%)
Similarity:165/324 - (50%) Gaps:46/324 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 RQQSLHTIVRKCTPD----------DVRVLKDAAAKWL-AEMPQSADSLFKPLVNV--RWSRVSF 90
            |.:|:..::....||          ||::|..|||..| .....:|..||:...:.  :..|:|.
  Rat    20 RLKSVKEVLCYSGPDLQRLTSLPSHDVQLLLRAAALHLRGSRVLTALHLFQQRESFPEQHQRLSL 84

  Fly    91 GCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFPAR 155
            ||..||:..|||:...|||.|.|.:..|||||.|||.|.||.||:.|||..|..|||||.:||::
  Rat    85 GCPVLDQFLGGGLPLEGITGLAGRSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTEDAFPSK 149

  Fly   156 RLLQMSKACEKRHPEM------ELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLIIIDS 214
            ||.|:.:..::...::      ::.|..:||:|:..:.:.|:.||..|:|.|:.:....|:::||
  Rat   150 RLWQLIEQLQELRTDVPGEVTQKIRFGNHIFIEHAADVDTLMECVSKRVPILLSRGMARLVVVDS 214

  Fly   215 VAAIFRLYNDYLE----RARHMRRLADALLSYADKYNCAVVCVNQVATRDGQDE----------I 265
            :||.||. ..:|:    ||:|:..|..||...:..:...|:|:||| |...:|:          .
  Rat   215 IAAPFRC-EFHLQASAVRAKHLHSLGAALQRLSSTFRSPVLCINQV-TEMVEDQESAGAWEERLS 277

  Fly   266 PCLGLQWAHLGRTRLRVSRVPKQHRMGDQLIT------VRKLEILYSPETPNDFAEFLITAEGV 323
            |.||:.||:....:|.|.|:.:     |.:.|      .|.|.:|::|..|.....:.::.|||
  Rat   278 PALGITWANQLLMQLMVDRIHE-----DSVTTGLPRSPARTLRVLFAPHLPLSSCCYTVSGEGV 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-BNP_476740.1 Rad51 87..323 CDD:285604 88/261 (34%)
Rad51_DMC1_radA 88..324 CDD:238543 89/262 (34%)
Xrcc3XP_006240711.1 Rad51 64..336 CDD:285604 91/278 (33%)
Rad51_DMC1_radA 82..337 CDD:238543 89/262 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352713
Domainoid 1 1.000 144 1.000 Domainoid score I4509
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H36178
Inparanoid 1 1.050 144 1.000 Inparanoid score I4361
OMA 1 1.010 - - QHG58343
OrthoDB 1 1.010 - - D1341207at2759
OrthoFinder 1 1.000 - - FOG0005621
OrthoInspector 1 1.000 - - oto97680
orthoMCL 1 0.900 - - OOG6_104619
Panther 1 1.100 - - LDO PTHR46487
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5264
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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