DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PR-Set7 and Su(var)3-9

DIOPT Version :9

Sequence 1:NP_001247100.1 Gene:PR-Set7 / 41743 FlyBaseID:FBgn0011474 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_524357.2 Gene:Su(var)3-9 / 41483 FlyBaseID:FBgn0263755 Length:635 Species:Drosophila melanogaster


Alignment Length:672 Identity:137/672 - (20%)
Similarity:225/672 - (33%) Gaps:207/672 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 SQKTIHTEEQLNLGN------------------QELKLDDE-ELNGQIKLDDEVLKLADKQINEN 156
            |.:.|..:..:|:|.                  |.::..:| |.|..|||:    :|::|:|...
  Fly    31 SPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLE----RLSEKKIKNL 91

  Fly   157 LPFADEVDAKAEQKLMDEELQQVVEELLFDGSSR------ASSNSPFYQHDMDVMQEIQQTPEIP 215
            |....:   :.:.::....:.:.:.||......|      |||:.|.....:|     ::|    
  Fly    92 LTSKQQ---RQQYEIKQRSMLRHLAELRRHSRFRRLCTKPASSSMPASTSSVD-----RRT---- 144

  Fly   216 HIKKVTEPLEGLGSLADFQTHRSALRDSHSSTHSSSTDNIFLQEPVLTLDIDRTPTKASSIKI-- 278
                               |.||..:.|.|.::||...::|..|   ..|:|:.|:.....|:  
  Fly   145 -------------------TRRSTSQTSLSPSNSSGYGSVFGCE---EHDVDKIPSLNGFAKLKR 187

  Fly   279 -------------NRSFELAGAVFSSPPSVLNACLNGRFNQIVSLNGQKEALDLPHFD------- 323
                         .||....|.:...||       .|.:  :|.   :.|.:::..:.       
  Fly   188 RRSSCVGAPTPNSKRSKNNMGVIAKRPP-------KGEY--VVE---RIECVEMDQYQPVFFVKW 240

  Fly   324 LDQHDSSSCDSGVACGLTANTESPAGQPRRRKPATPHRILCPSPIKTALKVTGGICKVGSADPLS 388
            |..|||.:....:|        :.|......|....|:.|....|   .|:|..:.|...|.||.
  Fly   241 LGYHDSENTWESLA--------NVADCAEMEKFVERHQQLYEIYI---AKITTELEKQLEALPLM 294

  Fly   389 PR--------KSPRKLPTTTAAVAACKSRRRLNQPKPQ-----APYQPQLQKPPSQQQQQQQDDI 440
            ..        ..|..|......:|..::....:|.:||     |....|:::....:::|..|  
  Fly   295 ENITVAEVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFVRRKQLAD-- 357

  Fly   441 VVVLDDDDDEGDDEDDVRALIKAAEERENQNKAPA------------TANSNKAGMKTMLKPAPV 493
                                :...|:|.|..:.|:            |.:||...:...:....|
  Fly   358 --------------------LALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGKDV 402

  Fly   494 KSKTKSKGPTKGQPPLPLA------ATNGNREMT-----------DFFPVRRSVRKTKTAVKEEW 541
                          |.|.|      .|....|.|           :.|...||.|:.:.......
  Fly   403 --------------PKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPGSAI 453

  Fly   542 MRGLEQAVLEERCDGLQVRH-----------FMGKGRGVVADRPFKRNEFVVEYVGDLISIGEAA 595
            .....:...:..|....|:|           ..|.|.||.|....::.|||.||:|::|:..||.
  Fly   454 YECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRKGEFVCEYIGEIITSDEAN 518

  Fly   596 EREKRYALDENAGCYMY---YFKHKSQQYCIDATVDTGKLGRLINHSRAGNLMTKVVLIKQ---- 653
            ||.|.|  |:|...|::   |...:..:|.||| .:.|.:...||||...||......|:.    
  Fly   519 ERGKAY--DDNGRTYLFDLDYNTAQDSEYTIDA-ANYGNISHFINHSCDPNLAVFPCWIEHLNVA 580

  Fly   654 RPHLVLLAKDDIEPGEELTYDY 675
            .||||......|:.||||::||
  Fly   581 LPHLVFFTLRPIKAGEELSFDY 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PR-Set7NP_001247100.1 SET 566..676 CDD:279228 44/117 (38%)
Su(var)3-9NP_524357.2 P-loop_NTPase 41..>80 CDD:304359 7/38 (18%)
CHROMO 217..268 CDD:237991 10/63 (16%)
PreSET 362..455 CDD:128744 18/106 (17%)
SET 477..609 CDD:214614 45/129 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467615
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.