DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII15 and RPA12

DIOPT Version :9

Sequence 1:NP_001247099.1 Gene:RpII15 / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_012597.1 Gene:RPA12 / 853526 SGDID:S000003824 Length:125 Species:Saccharomyces cerevisiae


Alignment Length:127 Identity:28/127 - (22%)
Similarity:48/127 - (37%) Gaps:33/127 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 FCQECNNMLYPKEDKENKIL--LYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDV------ 76
            ||.:|.::|    :..|.:|  ...|..|        ..||.......:..:|....|.      
Yeast     9 FCLDCGDLL----ENPNAVLGSNVECSQC--------KAIYPKSQFSNLKVVTTTADDAFPSSLR 61

  Fly    77 ----ISDPTLPRTE--DHA-----CPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
                :...:|.:.|  |.|     ||:|.:.|..:...|.|.|:|...::|.||  :|.:::
Yeast    62 AKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCT--SCGYKF 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII15NP_001247099.1 RPB9 18..129 CDD:224510 28/127 (22%)
Zn-ribbon_RPB9 78..128 CDD:259793 16/57 (28%)
RPA12NP_012597.1 RPB9 6..124 CDD:224510 28/127 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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