DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII15 and TCEA2

DIOPT Version :9

Sequence 1:NP_001247099.1 Gene:RpII15 / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:XP_005260286.1 Gene:TCEA2 / 6919 HGNCID:11614 Length:324 Species:Homo sapiens


Alignment Length:70 Identity:21/70 - (30%)
Similarity:31/70 - (44%) Gaps:11/70 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 DELTHI----VPDVISDPTLPR-----TEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQN 122
            |||..|    ..:.|.:..:.|     |:...|.||..:...:.|.|||.::|.|..:.||  ..
Human   229 DELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NE 291

  Fly   123 CTHRW 127
            |.:||
Human   292 CGNRW 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII15NP_001247099.1 RPB9 18..129 CDD:224510 21/70 (30%)
Zn-ribbon_RPB9 78..128 CDD:259793 16/55 (29%)
TCEA2XP_005260286.1 TFIIS_I 5..81 CDD:238107
TFSII 6..297 CDD:273592 21/70 (30%)
TFIIS_M 136..243 CDD:284835 4/13 (31%)
Zn-ribbon_TFIIS 252..297 CDD:259796 15/47 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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