DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII15 and TCEA1

DIOPT Version :9

Sequence 1:NP_001247099.1 Gene:RpII15 / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_006747.1 Gene:TCEA1 / 6917 HGNCID:11612 Length:301 Species:Homo sapiens


Alignment Length:128 Identity:28/128 - (21%)
Similarity:40/128 - (31%) Gaps:54/128 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RNCDYKQEADSNCIYVNKIMHEIDELT--------------HIVPDVISDPTL------------ 82
            ||.|.|        |.|::...|..|.              :|.||:.:..|.            
Human   181 RNTDMK--------YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMR 237

  Fly    83 ------------------PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
                              .:|:...|.||..:...:.|.|||.|:|.|..:.||  ..|.:||
Human   238 KNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRW 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII15NP_001247099.1 RPB9 18..129 CDD:224510 28/128 (22%)
Zn-ribbon_RPB9 78..128 CDD:259793 17/80 (21%)
TCEA1NP_006747.1 TFSII 4..301 CDD:273592 28/128 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..137
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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