Protein Alignment Polr2I and polr3k

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_001016313.1
• Gene: polr3k / 548520
• XenbaseID: XB-GENE-5913354
• Length: 108
• Species: Xenopus tropicalis
• Alignment Length: 120
• Identity: 38/120 - (31%)
• Similarity: 50/120 - (41%)
• Gaps: 25/120 - (20%)

  Fly    20 FCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-------MHEIDELTHIVPDVI 77
            ||..|.|:|..:|.:  |...:||..|.|....:      .|:       :.|:|       ||:
 Frog     4 FCPTCGNVLIVEEGQ--KCYRFACNTCPYVHNVN------RKVTSRKYPKLKEVD-------DVL 53

  Fly    78 SDPTLPRTED---HACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
            .........|   ..||||.|..|.|.|.|||.|:|.|..:|.|.|..|.|||.:
 Frog    54 GGSAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	38/118 (32%)
		Zn-ribbon_RPB9	78..128	CDD:259793	21/52 (40%)
polr3k	NP_001016313.1	RPB9	4..107	CDD:441202	37/117 (32%)
		Zn-ribbon_RPC11	61..108	CDD:259794	22/46 (48%)