DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2I and AT1G20065

DIOPT Version :10

Sequence 1:NP_731898.1 Gene:Polr2I / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_001185044.1 Gene:AT1G20065 / 5007707 AraportID:AT1G20065 Length:91 Species:Arabidopsis thaliana


Alignment Length:46 Identity:16/46 - (34%)
Similarity:18/46 - (39%) Gaps:11/46 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 IRFCQECNNMLYPKEDKENKILLYA-CRNCDY----KQEADSNCIY 58
            |.||..|..||..|..|      || |..|:.    |:..|.|..|
plant     9 ILFCNLCGTMLVLKSTK------YAECPLCETTRNGKEIIDKNLAY 48

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2INP_731898.1 RPB9 19..129 CDD:441202 15/45 (33%)
Zn-ribbon_RPB9 78..128 CDD:259793
AT1G20065NP_001185044.1 None
Blue background indicates that the domain is not in the aligned region.

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