Protein Alignment Polr2I and polr3k

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_001002553.1
• Gene: polr3k / 436826
• ZFINID: ZDB-GENE-040718-291
• Length: 108
• Species: Danio rerio
• Alignment Length: 117
• Identity: 37/117 - (31%)
• Similarity: 51/117 - (43%)
• Gaps: 19/117 - (16%)

  Fly    20 FCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH----IVPDVISDP 80
            ||..|.|:|..:|.:  :...:||..|.          ||:.|..:::...:    .|.||:...
Zfish     4 FCPTCGNVLIVEEGQ--RCFRFACNTCP----------YVHNITRKVNNRKYPKLKEVDDVLGGS 56

  Fly    81 TLPRTED---HACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
            ......|   ..||||.|..|.|.|.|||.|:|.|..:|.|.|..|.|||.:
Zfish    57 AAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	37/115 (32%)
		Zn-ribbon_RPB9	78..128	CDD:259793	21/52 (40%)
polr3k	NP_001002553.1	RPB9	4..107	CDD:441202	36/114 (32%)
		Zn-ribbon_RPC11	61..108	CDD:259794	22/46 (48%)