DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII15 and tcea2

DIOPT Version :9

Sequence 1:NP_001247099.1 Gene:RpII15 / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_957280.2 Gene:tcea2 / 393961 ZFINID:ZDB-GENE-040426-985 Length:301 Species:Danio rerio


Alignment Length:43 Identity:15/43 - (34%)
Similarity:22/43 - (51%) Gaps:2/43 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 TEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
            |:...|.||..:...:.|.|||.|:|.|..:.:|  ..|.:||
Zfish   258 TDMFVCGKCKGKNCTYTQVQTRSADEPMTTFVLC--NECGNRW 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII15NP_001247099.1 RPB9 18..129 CDD:224510 15/43 (35%)
Zn-ribbon_RPB9 78..128 CDD:259793 15/43 (35%)
tcea2NP_957280.2 TFIIS_I 5..80 CDD:238107
TFSII 6..301 CDD:273592 15/43 (35%)
TFIIS_M 138..245 CDD:284835
Zn-ribbon_TFIIS 254..300 CDD:259796 15/43 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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