DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII15 and Tceanc2

DIOPT Version :9

Sequence 1:NP_001247099.1 Gene:RpII15 / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_001014282.1 Gene:Tceanc2 / 366431 RGDID:1359481 Length:207 Species:Rattus norvegicus


Alignment Length:80 Identity:20/80 - (25%)
Similarity:35/80 - (43%) Gaps:21/80 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PKEDKENKILLYACRNCDYKQEADSNCIY--------VNKI-MHEIDELTHIVPDVISD-PTL-- 82
            |::.|||  |:.|.:  :.|::..|..:.        |||: .|...|:..:..:|.:: .|.  
  Rat    51 PEQTKEN--LVAALQ--ELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYTEWKTFIE 111

  Fly    83 -----PRTEDHACPK 92
                 |..|.|:.||
  Rat   112 NHLDRPSIEVHSDPK 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII15NP_001247099.1 RPB9 18..129 CDD:224510 20/80 (25%)
Zn-ribbon_RPB9 78..128 CDD:259793 6/23 (26%)
Tceanc2NP_001014282.1 TFIIS_I 38..111 CDD:238107 15/63 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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