DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2I and TfIIS

DIOPT Version :10

Sequence 1:NP_731898.1 Gene:Polr2I / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_476967.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster


Alignment Length:70 Identity:22/70 - (31%)
Similarity:33/70 - (47%) Gaps:11/70 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 DELTHI----VPDVISDPTL-----PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQN 122
            ||:..:    |.:.|:|..|     .:|:...|.||..|...:.|.|||.|:|.|..:.:|  ..
  Fly   243 DEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NE 305

  Fly   123 CTHRW 127
            |.:||
  Fly   306 CGNRW 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2INP_731898.1 RPB9 19..129 CDD:441202 22/70 (31%)
Zn-ribbon_RPB9 78..128 CDD:259793 18/55 (33%)
TfIISNP_476967.1 TFSII 5..313 CDD:273592 22/70 (31%)

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