DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2I and tcea1

DIOPT Version :10

Sequence 1:NP_731898.1 Gene:Polr2I / 41741 FlyBaseID:FBgn0004855 Length:129 Species:Drosophila melanogaster
Sequence 2:NP_956288.1 Gene:tcea1 / 336105 ZFINID:ZDB-GENE-030131-8049 Length:309 Species:Danio rerio


Alignment Length:126 Identity:25/126 - (19%)
Similarity:41/126 - (32%) Gaps:46/126 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 CDYKQEADSNCIYVNKIMHEIDELT--------------HIVPDVISDPTLPR------------ 84
            |.:.:..:::..|.|::...|..|.              ::.||.|:..|...            
Zfish   183 CIFLEFKNTDMKYKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKN 247

  Fly    85 -----TEDH-------------ACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
                 ..||             .|.||..::..:.|.|||.|:|.|..:..|  ..|.:||
Zfish   248 LTKEAIRDHQVATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFC--NECGNRW 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2INP_731898.1 RPB9 19..129 CDD:441202 25/126 (20%)
Zn-ribbon_RPB9 78..128 CDD:259793 17/80 (21%)
tcea1NP_956288.1 TFSII 7..309 CDD:273592 25/126 (20%)

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