Protein Alignment Polr2I and Tcea3

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_001015008.1
• Gene: Tcea3 / 298559
• RGDID: 1311369
• Length: 348
• Species: Rattus norvegicus
• Alignment Length: 159
• Identity: 32/159 - (20%)
• Similarity: 50/159 - (31%)
• Gaps: 57/159 - (35%)

  Fly    23 ECNNMLYPKEDKENKILLYACRNCD----------YKQEADSNCIYVNKIMHEIDELTH------ 71
            :|..||......|:....|.. |||          |::...::..|.|::...|..|..
  Rat   190 KCVEMLSAALKAEDDFKDYGV-NCDKLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGL 253

  Fly    72 --------IVPDVISDPTLPR------------------------------TEDHACPKCSHREA 98
                    |.|::|:..|...                              |:...|.||..:..
  Rat   254 RRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNC 318

  Fly    99 VFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
            .:.|.|||.|:|.|..:.:|  ..|.:||
  Rat   319 TYNQVQTRSADEPMTTFVLC--NECGNRW 345

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	32/159 (20%)
		Zn-ribbon_RPB9	78..128	CDD:259793	16/80 (20%)
Tcea3	NP_001015008.1	TFSII	5..348	CDD:273592	32/159 (20%)