Protein Alignment Polr2I and rpb9

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_594705.1
• Gene: rpb9 / 2541470
• PomBaseID: SPAPYUG7.04C
• Length: 113
• Species: Schizosaccharomyces pombe
• Alignment Length: 102
• Identity: 47/102 - (46%)
• Similarity: 68/102 - (66%)
• Gaps: 1/102 - (0%)

  Fly    19 RFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLP 83
            ::|.||||||||:|||.:::|..|||||||.:.|.::.:|.:::.....|.|.:..|..:|||||
pombe     5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLP 69

  Fly    84 RTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTN 120
            |: |..||:|...||||:|..:||.:..|.|.|||.:
pombe    70 RS-DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVH 105

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	47/102 (46%)
		Zn-ribbon_RPB9	78..128	CDD:259793	22/43 (51%)
rpb9	NP_594705.1	RPOL9	5..58	CDD:197822	24/52 (46%)
		Zn-ribbon_RPB9	64..110	CDD:259793	22/43 (51%)