Protein Alignment Polr2I and rpa12

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_588059.1
• Gene: rpa12 / 2538906
• PomBaseID: SPCC1259.03
• Length: 119
• Species: Schizosaccharomyces pombe
• Alignment Length: 115
• Identity: 29/115 - (25%)
• Similarity: 44/115 - (38%)
• Gaps: 13/115 - (11%)

  Fly    20 FCQECNNMLYPKEDKENKILLYACRNCD--YKQEADSNCIYVNK----IMHEIDELTHIVPDVIS 78
            ||.||.|:|     :........|..|.  |..|..:|.:...|    ......:|.|.:..|.|
pombe     9 FCSECGNLL-----ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVES 68

  Fly    79 DPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWT 128
            ......|.:..||||.:....|...|.|.|:|...::|.|  ..|.::::
pombe    69 QKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC--PRCAYKFS 116

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	29/115 (25%)
		Zn-ribbon_RPB9	78..128	CDD:259793	14/49 (29%)
rpa12	NP_588059.1	RPB9	9..114	CDD:441202	29/111 (26%)
		Zn-ribbon_RPA12	72..118	CDD:259792	13/47 (28%)