Protein Alignment Polr2I and rpoa-12

DIOPT Version :10

• Sequence 1: NP_731898.1
• Gene: Polr2I / 41741
• FlyBaseID: FBgn0004855
• Length: 129
• Species: Drosophila melanogaster
• Sequence 2: NP_506572.1
• Gene: rpoa-12 / 182648
• WormBaseID: WBGene00007616
• Length: 119
• Species: Caenorhabditis elegans
• Alignment Length: 104
• Identity: 31/104 - (29%)
• Similarity: 42/104 - (40%)
• Gaps: 12/104 - (11%)

  Fly    20 FCQECNNMLYPKEDKENKILLYACRNCD----YKQEADSNCIYVNKIMHEIDELTHIVPDVI-SD 79
            ||..|..:|   |.........:|:.|.    .|:..|.....|.||.    |.|....|.| :|
 Worm    12 FCGYCGAIL---ELPAQAPATVSCKVCSTRWAVKERVDQVVSRVEKIY----ERTVADTDGIEND 69

  Fly    80 PTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVC 118
            .:.....||.|.||.|.:|.:...|||.|:|...::|.|
 Worm    70 ESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTC 108

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2I	NP_731898.1	RPB9	19..129	CDD:441202	31/104 (30%)
		Zn-ribbon_RPB9	78..128	CDD:259793	15/41 (37%)
rpoa-12	NP_506572.1	RPB9	12..118	CDD:441202	31/104 (30%)
		Zn-ribbon_RPA12	74..117	CDD:259792	14/35 (40%)